Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_07410 and BNILDI_07415 are separated by 15 nucleotides BNILDI_07415 and BNILDI_07420 overlap by 14 nucleotides BNILDI_07420 and argF are separated by 100 nucleotides
BNILDI_07410: BNILDI_07410 - DNA-binding protein, at 1,477,778 to 1,478,752
_07410
BNILDI_07415: BNILDI_07415 - DNA-binding protein, at 1,478,768 to 1,479,121
_07415
BNILDI_07420: BNILDI_07420 - DNA-binding protein, at 1,479,108 to 1,479,338
_07420
BNILDI_07425: argF - ornithine carbamoyltransferase, at 1,479,439 to 1,480,443
argF
Position (kb) 1479
1480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1478.182 kb on + strand, within BNILDI_07410 at 1478.513 kb on + strand, within BNILDI_07410 at 1479.048 kb on + strand, within BNILDI_07415 at 1479.048 kb on + strand, within BNILDI_07415 at 1479.182 kb on + strand, within BNILDI_07420 at 1479.335 kb on - strand at 1479.477 kb on + strand at 1479.559 kb on + strand, within argF at 1479.694 kb on + strand, within argF at 1479.695 kb on - strand, within argF at 1479.746 kb on - strand, within argF at 1479.746 kb on - strand, within argF at 1479.746 kb on - strand, within argF at 1479.753 kb on + strand, within argF at 1479.755 kb on + strand, within argF at 1479.755 kb on + strand, within argF at 1479.755 kb on + strand, within argF at 1479.759 kb on + strand, within argF at 1479.759 kb on + strand, within argF at 1479.760 kb on - strand, within argF at 1479.787 kb on + strand, within argF at 1479.788 kb on - strand, within argF at 1479.946 kb on - strand, within argF at 1479.962 kb on + strand, within argF at 1479.963 kb on - strand, within argF at 1480.134 kb on + strand, within argF at 1480.142 kb on + strand, within argF at 1480.142 kb on + strand, within argF at 1480.142 kb on + strand, within argF at 1480.142 kb on + strand, within argF at 1480.142 kb on + strand, within argF at 1480.142 kb on + strand, within argF at 1480.143 kb on - strand, within argF at 1480.143 kb on - strand, within argF at 1480.143 kb on - strand, within argF at 1480.174 kb on - strand, within argF at 1480.186 kb on - strand, within argF at 1480.217 kb on + strand, within argF at 1480.217 kb on + strand, within argF at 1480.218 kb on - strand, within argF at 1480.218 kb on - strand, within argF at 1480.241 kb on + strand, within argF
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 1,478,182 + BNILDI_07410 0.41 -0.6 1,478,513 + BNILDI_07410 0.75 -0.3 1,479,048 + BNILDI_07415 0.79 -1.5 1,479,048 + BNILDI_07415 0.79 +0.2 1,479,182 + BNILDI_07420 0.32 -0.3 1,479,335 - +0.2 1,479,477 + -1.6 1,479,559 + argF BNILDI_07425 0.12 -1.0 1,479,694 + argF BNILDI_07425 0.25 -1.3 1,479,695 - argF BNILDI_07425 0.25 -2.0 1,479,746 - argF BNILDI_07425 0.31 -1.1 1,479,746 - argF BNILDI_07425 0.31 -0.3 1,479,746 - argF BNILDI_07425 0.31 +0.1 1,479,753 + argF BNILDI_07425 0.31 -1.1 1,479,755 + argF BNILDI_07425 0.31 -0.8 1,479,755 + argF BNILDI_07425 0.31 +0.4 1,479,755 + argF BNILDI_07425 0.31 +0.1 1,479,759 + argF BNILDI_07425 0.32 -1.2 1,479,759 + argF BNILDI_07425 0.32 +0.3 1,479,760 - argF BNILDI_07425 0.32 +1.1 1,479,787 + argF BNILDI_07425 0.35 -0.7 1,479,788 - argF BNILDI_07425 0.35 -1.1 1,479,946 - argF BNILDI_07425 0.50 +0.2 1,479,962 + argF BNILDI_07425 0.52 +0.0 1,479,963 - argF BNILDI_07425 0.52 -0.8 1,480,134 + argF BNILDI_07425 0.69 +1.3 1,480,142 + argF BNILDI_07425 0.70 -1.0 1,480,142 + argF BNILDI_07425 0.70 -0.8 1,480,142 + argF BNILDI_07425 0.70 -1.9 1,480,142 + argF BNILDI_07425 0.70 +2.1 1,480,142 + argF BNILDI_07425 0.70 -1.6 1,480,142 + argF BNILDI_07425 0.70 +0.0 1,480,143 - argF BNILDI_07425 0.70 +1.3 1,480,143 - argF BNILDI_07425 0.70 -1.1 1,480,143 - argF BNILDI_07425 0.70 +0.3 1,480,174 - argF BNILDI_07425 0.73 -0.5 1,480,186 - argF BNILDI_07425 0.74 -0.3 1,480,217 + argF BNILDI_07425 0.77 +0.3 1,480,217 + argF BNILDI_07425 0.77 +0.0 1,480,218 - argF BNILDI_07425 0.78 +0.9 1,480,218 - argF BNILDI_07425 0.78 +2.3 1,480,241 + argF BNILDI_07425 0.80 -0.7
Or see this region's nucleotide sequence