Strain Fitness in Escherichia coli ECRC62 around BNILDI_05010

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcorA and BNILDI_05010 are separated by 53 nucleotidesBNILDI_05010 and BNILDI_05015 overlap by 4 nucleotides BNILDI_05005: corA - magnesium/cobalt transporter CorA, at 991,789 to 992,739 corA BNILDI_05010: BNILDI_05010 - DUF943 domain-containing protein, at 992,793 to 993,272 _05010 BNILDI_05015: BNILDI_05015 - DUF3289 domain-containing protein, at 993,269 to 994,117 _05015 Position (kb) 992 993 994Strain fitness (log2 ratio) -1 0 1 2at 991.913 kb on + strand, within corAat 992.007 kb on + strand, within corAat 992.137 kb on - strand, within corAat 992.274 kb on + strand, within corAat 992.299 kb on + strand, within corAat 992.583 kb on - strand, within corAat 992.682 kb on + strandat 992.977 kb on + strand, within BNILDI_05010at 993.034 kb on + strand, within BNILDI_05010at 993.034 kb on + strand, within BNILDI_05010at 993.175 kb on + strand, within BNILDI_05010at 993.179 kb on + strand, within BNILDI_05010at 994.024 kb on - strand, within BNILDI_05015

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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991,913 + corA BNILDI_05005 0.13 +1.3
992,007 + corA BNILDI_05005 0.23 -0.5
992,137 - corA BNILDI_05005 0.37 +1.3
992,274 + corA BNILDI_05005 0.51 -0.9
992,299 + corA BNILDI_05005 0.54 +1.3
992,583 - corA BNILDI_05005 0.83 +0.3
992,682 + +2.3
992,977 + BNILDI_05010 0.38 +0.2
993,034 + BNILDI_05010 0.50 -0.0
993,034 + BNILDI_05010 0.50 -0.0
993,175 + BNILDI_05010 0.80 +2.3
993,179 + BNILDI_05010 0.80 +0.3
994,024 - BNILDI_05015 0.89 +0.1

Or see this region's nucleotide sequence