Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhlB and trxA are separated by 130 nucleotides trxA and rho are separated by 326 nucleotides
BNILDI_04790: rhlB - ATP-dependent RNA helicase RhlB, at 951,290 to 952,555
rhlB
BNILDI_04795: trxA - thioredoxin TrxA, at 952,686 to 953,015
trxA
BNILDI_04800: rho - transcription termination factor Rho, at 953,342 to 954,601
rho
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 951.763 kb on + strand, within rhlB at 951.764 kb on - strand, within rhlB at 951.838 kb on + strand, within rhlB at 951.862 kb on + strand, within rhlB at 951.862 kb on + strand, within rhlB at 951.866 kb on - strand, within rhlB at 951.901 kb on + strand, within rhlB at 951.901 kb on + strand, within rhlB at 952.022 kb on - strand, within rhlB at 952.022 kb on - strand, within rhlB at 952.027 kb on + strand, within rhlB at 952.030 kb on + strand, within rhlB at 952.030 kb on + strand, within rhlB at 952.030 kb on + strand, within rhlB at 952.044 kb on + strand, within rhlB at 952.045 kb on - strand, within rhlB at 952.045 kb on - strand, within rhlB at 952.067 kb on + strand, within rhlB at 952.067 kb on + strand, within rhlB at 952.068 kb on - strand, within rhlB at 952.292 kb on + strand, within rhlB at 952.293 kb on - strand, within rhlB at 952.556 kb on - strand at 952.576 kb on + strand at 952.579 kb on + strand at 952.580 kb on - strand at 952.580 kb on - strand at 952.587 kb on + strand at 952.637 kb on - strand at 952.637 kb on - strand at 952.637 kb on - strand at 952.667 kb on + strand at 952.667 kb on + strand at 952.681 kb on + strand at 952.682 kb on - strand at 952.683 kb on + strand at 952.683 kb on + strand at 952.683 kb on + strand at 952.684 kb on - strand at 952.684 kb on - strand at 952.684 kb on - strand at 952.685 kb on + strand at 952.686 kb on - strand at 952.686 kb on - strand at 952.735 kb on + strand, within trxA at 952.735 kb on + strand, within trxA at 953.075 kb on + strand at 953.076 kb on - strand at 953.080 kb on + strand at 953.081 kb on - strand at 953.097 kb on + strand at 953.108 kb on + strand at 953.111 kb on + strand at 953.153 kb on + strand at 953.153 kb on + strand at 953.153 kb on + strand at 953.216 kb on + strand at 953.286 kb on + strand at 953.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 951,763 + rhlB BNILDI_04790 0.37 +1.4 951,764 - rhlB BNILDI_04790 0.37 +0.4 951,838 + rhlB BNILDI_04790 0.43 -1.9 951,862 + rhlB BNILDI_04790 0.45 +0.9 951,862 + rhlB BNILDI_04790 0.45 +1.1 951,866 - rhlB BNILDI_04790 0.45 +1.9 951,901 + rhlB BNILDI_04790 0.48 +1.2 951,901 + rhlB BNILDI_04790 0.48 +0.2 952,022 - rhlB BNILDI_04790 0.58 +0.2 952,022 - rhlB BNILDI_04790 0.58 +1.3 952,027 + rhlB BNILDI_04790 0.58 +1.6 952,030 + rhlB BNILDI_04790 0.58 +0.8 952,030 + rhlB BNILDI_04790 0.58 +0.1 952,030 + rhlB BNILDI_04790 0.58 -0.1 952,044 + rhlB BNILDI_04790 0.60 +1.1 952,045 - rhlB BNILDI_04790 0.60 +1.0 952,045 - rhlB BNILDI_04790 0.60 +0.9 952,067 + rhlB BNILDI_04790 0.61 +1.2 952,067 + rhlB BNILDI_04790 0.61 +3.3 952,068 - rhlB BNILDI_04790 0.61 +1.7 952,292 + rhlB BNILDI_04790 0.79 +0.6 952,293 - rhlB BNILDI_04790 0.79 +1.2 952,556 - -2.6 952,576 + -0.8 952,579 + -0.5 952,580 - +1.2 952,580 - -0.5 952,587 + -0.7 952,637 - -1.5 952,637 - +0.8 952,637 - -0.2 952,667 + -0.1 952,667 + -1.2 952,681 + -1.7 952,682 - +1.7 952,683 + -0.2 952,683 + +0.8 952,683 + +0.3 952,684 - -0.8 952,684 - +1.3 952,684 - -0.5 952,685 + -0.8 952,686 - +1.8 952,686 - +0.8 952,735 + trxA BNILDI_04795 0.15 -0.2 952,735 + trxA BNILDI_04795 0.15 -0.3 953,075 + -1.2 953,076 - -1.0 953,080 + -1.1 953,081 - -0.2 953,097 + +1.3 953,108 + +0.3 953,111 + +0.2 953,153 + -0.8 953,153 + -1.1 953,153 + -1.4 953,216 + -2.4 953,286 + -2.2 953,301 + -2.4
Or see this region's nucleotide sequence