Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ilvC and ppiC are separated by 86 nucleotides ppiC and yifN are separated by 198 nucleotides yifN and rep are separated by 216 nucleotides
BNILDI_04765: ilvC - ketol-acid reductoisomerase, at 944,896 to 946,371
ilvC
BNILDI_04770: ppiC - peptidylprolyl isomerase PpiC, at 946,458 to 946,739
ppiC
BNILDI_04775: yifN - Putative uncharacterized protein YifN, at 946,938 to 947,387
yifN
BNILDI_04780: rep - DNA helicase Rep, at 947,604 to 949,625
rep
Position (kb) 946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 945.468 kb on + strand, within ilvC at 945.576 kb on + strand, within ilvC at 945.641 kb on - strand, within ilvC at 945.752 kb on - strand, within ilvC at 945.805 kb on - strand, within ilvC at 945.867 kb on + strand, within ilvC at 945.867 kb on + strand, within ilvC at 945.868 kb on - strand, within ilvC at 945.929 kb on - strand, within ilvC at 945.956 kb on - strand, within ilvC at 946.054 kb on + strand, within ilvC at 946.054 kb on + strand, within ilvC at 946.057 kb on + strand, within ilvC at 946.057 kb on + strand, within ilvC at 946.058 kb on - strand, within ilvC at 946.058 kb on - strand, within ilvC at 946.159 kb on + strand, within ilvC at 946.159 kb on + strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.160 kb on - strand, within ilvC at 946.172 kb on - strand, within ilvC at 946.236 kb on + strand at 946.237 kb on - strand at 946.313 kb on + strand at 946.333 kb on + strand at 946.334 kb on - strand at 946.344 kb on + strand at 946.345 kb on - strand at 946.345 kb on - strand at 946.353 kb on + strand at 946.353 kb on + strand at 946.353 kb on + strand at 946.354 kb on - strand at 946.456 kb on + strand at 946.456 kb on + strand at 946.457 kb on - strand at 946.459 kb on + strand at 946.459 kb on + strand at 946.459 kb on + strand at 946.479 kb on - strand at 946.550 kb on + strand, within ppiC at 946.591 kb on - strand, within ppiC at 946.591 kb on - strand, within ppiC at 946.758 kb on + strand at 946.759 kb on - strand at 946.778 kb on + strand at 946.802 kb on + strand at 946.802 kb on + strand at 946.802 kb on + strand at 946.803 kb on - strand at 946.803 kb on - strand at 946.827 kb on + strand at 946.827 kb on + strand at 946.828 kb on - strand at 946.828 kb on - strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.831 kb on + strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.832 kb on - strand at 946.833 kb on + strand at 946.834 kb on - strand at 946.987 kb on - strand, within yifN at 946.987 kb on - strand, within yifN at 947.022 kb on - strand, within yifN at 947.022 kb on - strand, within yifN at 947.027 kb on - strand, within yifN at 947.036 kb on - strand, within yifN at 947.169 kb on + strand, within yifN at 947.196 kb on + strand, within yifN at 947.210 kb on + strand, within yifN at 947.211 kb on - strand, within yifN at 947.251 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.291 kb on - strand, within yifN at 947.293 kb on + strand, within yifN at 947.329 kb on + strand, within yifN at 947.367 kb on - strand at 947.378 kb on + strand at 947.406 kb on + strand at 947.406 kb on + strand at 947.446 kb on - strand at 947.453 kb on - strand at 947.458 kb on + strand at 947.458 kb on + strand at 947.504 kb on + strand at 947.534 kb on + strand at 947.534 kb on + strand at 947.535 kb on - strand at 947.597 kb on + strand at 947.597 kb on + strand at 947.598 kb on - strand at 947.603 kb on + strand at 947.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 945,468 + ilvC BNILDI_04765 0.39 -2.2 945,576 + ilvC BNILDI_04765 0.46 +0.4 945,641 - ilvC BNILDI_04765 0.50 -0.7 945,752 - ilvC BNILDI_04765 0.58 -1.1 945,805 - ilvC BNILDI_04765 0.62 -0.3 945,867 + ilvC BNILDI_04765 0.66 +0.3 945,867 + ilvC BNILDI_04765 0.66 -0.3 945,868 - ilvC BNILDI_04765 0.66 -2.0 945,929 - ilvC BNILDI_04765 0.70 +1.3 945,956 - ilvC BNILDI_04765 0.72 +1.3 946,054 + ilvC BNILDI_04765 0.78 +1.5 946,054 + ilvC BNILDI_04765 0.78 -1.2 946,057 + ilvC BNILDI_04765 0.79 +1.2 946,057 + ilvC BNILDI_04765 0.79 +0.5 946,058 - ilvC BNILDI_04765 0.79 +0.2 946,058 - ilvC BNILDI_04765 0.79 +1.3 946,159 + ilvC BNILDI_04765 0.86 -1.5 946,159 + ilvC BNILDI_04765 0.86 -0.5 946,160 - ilvC BNILDI_04765 0.86 -1.6 946,160 - ilvC BNILDI_04765 0.86 -2.0 946,160 - ilvC BNILDI_04765 0.86 -1.3 946,160 - ilvC BNILDI_04765 0.86 -1.9 946,160 - ilvC BNILDI_04765 0.86 -1.3 946,172 - ilvC BNILDI_04765 0.86 -0.2 946,236 + -0.6 946,237 - -0.3 946,313 + +1.8 946,333 + +0.7 946,334 - -0.6 946,344 + +0.1 946,345 - +1.3 946,345 - +0.3 946,353 + +1.3 946,353 + -0.2 946,353 + -2.4 946,354 - -1.5 946,456 + -1.0 946,456 + -1.7 946,457 - -1.2 946,459 + +2.8 946,459 + -0.5 946,459 + -0.2 946,479 - -1.7 946,550 + ppiC BNILDI_04770 0.33 -1.2 946,591 - ppiC BNILDI_04770 0.47 -0.9 946,591 - ppiC BNILDI_04770 0.47 +0.8 946,758 + -1.6 946,759 - -1.5 946,778 + -0.9 946,802 + -0.7 946,802 + -0.7 946,802 + -1.5 946,803 - -0.6 946,803 - -0.0 946,827 + -2.9 946,827 + -2.6 946,828 - +0.2 946,828 - +0.8 946,831 + -0.2 946,831 + -1.1 946,831 + +0.2 946,831 + -1.7 946,831 + +0.7 946,831 + -0.2 946,831 + -0.5 946,831 + -0.7 946,831 + +0.8 946,831 + -0.5 946,831 + +2.3 946,831 + -0.6 946,831 + -0.5 946,831 + +0.3 946,831 + -0.8 946,832 - +1.0 946,832 - +0.5 946,832 - -0.8 946,832 - -0.8 946,832 - -0.6 946,832 - +0.3 946,832 - -1.4 946,832 - +0.0 946,832 - -0.0 946,832 - -0.2 946,832 - -1.4 946,833 + -0.9 946,834 - +0.2 946,987 - yifN BNILDI_04775 0.11 -1.5 946,987 - yifN BNILDI_04775 0.11 -0.2 947,022 - yifN BNILDI_04775 0.19 -3.1 947,022 - yifN BNILDI_04775 0.19 -0.3 947,027 - yifN BNILDI_04775 0.20 -0.3 947,036 - yifN BNILDI_04775 0.22 -0.2 947,169 + yifN BNILDI_04775 0.51 +0.7 947,196 + yifN BNILDI_04775 0.57 -0.7 947,210 + yifN BNILDI_04775 0.60 -1.5 947,211 - yifN BNILDI_04775 0.61 +1.0 947,251 - yifN BNILDI_04775 0.70 -0.5 947,291 - yifN BNILDI_04775 0.78 +0.0 947,291 - yifN BNILDI_04775 0.78 -0.2 947,291 - yifN BNILDI_04775 0.78 -0.4 947,293 + yifN BNILDI_04775 0.79 +0.7 947,329 + yifN BNILDI_04775 0.87 -0.2 947,367 - -0.3 947,378 + +2.1 947,406 + -0.5 947,406 + -1.0 947,446 - -1.8 947,453 - -0.0 947,458 + -0.2 947,458 + -0.1 947,504 + -0.7 947,534 + +1.0 947,534 + +0.8 947,535 - -0.5 947,597 + +0.1 947,597 + +0.9 947,598 - +2.3 947,603 + +0.0 947,604 - +1.3
Or see this region's nucleotide sequence