Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hdfR and maoP are separated by 118 nucleotides maoP and yifB are separated by 25 nucleotides yifB and ilvX are separated by 537 nucleotides ilvX and ilvG are separated by 2 nucleotides
BNILDI_04715: hdfR - HTH-type transcriptional regulator HdfR, at 934,109 to 934,948
hdfR
BNILDI_04720: maoP - macrodomain Ori organization protein MaoP, at 935,067 to 935,405
maoP
BNILDI_04725: yifB - YifB family Mg chelatase-like AAA ATPase, at 935,431 to 936,951
yifB
BNILDI_04730: ilvX - Uncharacterized protein IlvX, at 937,489 to 937,539
ilvX
BNILDI_04735: ilvG - acetolactate synthase 2 catalytic subunit, at 937,542 to 939,188
ilvG
Position (kb) 935
936
937 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 934.441 kb on + strand, within hdfR at 934.442 kb on - strand, within hdfR at 934.443 kb on + strand, within hdfR at 934.443 kb on + strand, within hdfR at 934.444 kb on - strand, within hdfR at 934.480 kb on + strand, within hdfR at 934.511 kb on - strand, within hdfR at 934.586 kb on + strand, within hdfR at 934.586 kb on + strand, within hdfR at 934.587 kb on - strand, within hdfR at 934.636 kb on + strand, within hdfR at 934.642 kb on + strand, within hdfR at 934.642 kb on + strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.643 kb on - strand, within hdfR at 934.749 kb on + strand, within hdfR at 934.749 kb on + strand, within hdfR at 934.913 kb on - strand at 934.967 kb on - strand at 935.013 kb on + strand at 935.036 kb on + strand at 935.036 kb on + strand at 935.036 kb on + strand at 935.037 kb on - strand at 935.254 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.307 kb on + strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.308 kb on - strand, within maoP at 935.309 kb on + strand, within maoP at 935.309 kb on + strand, within maoP at 935.310 kb on - strand, within maoP at 935.310 kb on - strand, within maoP at 935.386 kb on - strand at 935.386 kb on - strand at 935.484 kb on + strand at 935.484 kb on + strand at 935.485 kb on - strand at 935.485 kb on - strand at 935.685 kb on + strand, within yifB at 935.723 kb on - strand, within yifB at 935.769 kb on + strand, within yifB at 935.770 kb on - strand, within yifB at 935.853 kb on - strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.857 kb on + strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 935.858 kb on - strand, within yifB at 936.024 kb on + strand, within yifB at 936.024 kb on + strand, within yifB at 936.024 kb on + strand, within yifB at 936.197 kb on - strand, within yifB at 936.205 kb on + strand, within yifB at 936.205 kb on + strand, within yifB at 936.206 kb on - strand, within yifB at 936.206 kb on - strand, within yifB at 936.206 kb on - strand, within yifB at 936.241 kb on + strand, within yifB at 936.241 kb on + strand, within yifB at 936.241 kb on + strand, within yifB at 936.242 kb on - strand, within yifB at 936.261 kb on + strand, within yifB at 936.265 kb on - strand, within yifB at 936.285 kb on + strand, within yifB at 936.285 kb on + strand, within yifB at 936.286 kb on - strand, within yifB at 936.394 kb on + strand, within yifB at 936.445 kb on - strand, within yifB at 936.509 kb on - strand, within yifB at 936.509 kb on - strand, within yifB at 936.509 kb on - strand, within yifB at 936.529 kb on - strand, within yifB at 936.561 kb on + strand, within yifB at 936.561 kb on + strand, within yifB at 936.562 kb on - strand, within yifB at 936.565 kb on - strand, within yifB at 936.649 kb on + strand, within yifB at 936.650 kb on - strand, within yifB at 936.654 kb on + strand, within yifB at 936.703 kb on + strand, within yifB at 936.703 kb on + strand, within yifB at 936.704 kb on - strand, within yifB at 936.704 kb on - strand, within yifB at 936.704 kb on - strand, within yifB at 936.704 kb on - strand, within yifB at 936.779 kb on + strand, within yifB at 936.842 kb on - strand at 936.857 kb on - strand at 936.879 kb on + strand at 936.879 kb on + strand at 936.879 kb on + strand at 936.880 kb on - strand at 936.880 kb on - strand at 936.880 kb on - strand at 936.884 kb on - strand at 936.884 kb on - strand at 936.884 kb on - strand at 936.884 kb on - strand at 936.911 kb on - strand at 936.951 kb on + strand at 936.951 kb on + strand at 936.951 kb on + strand at 936.951 kb on + strand at 936.952 kb on - strand at 936.952 kb on - strand at 936.973 kb on + strand at 936.973 kb on + strand at 937.112 kb on + strand at 937.112 kb on + strand at 937.113 kb on - strand at 937.260 kb on - strand at 937.327 kb on + strand at 937.400 kb on + strand at 937.422 kb on + strand at 937.538 kb on - strand at 937.538 kb on - strand at 937.542 kb on - strand at 937.542 kb on - strand at 937.564 kb on + strand at 937.565 kb on - strand at 937.645 kb on - strand at 937.645 kb on - strand at 937.738 kb on + strand, within ilvG at 937.738 kb on + strand, within ilvG at 937.739 kb on - strand, within ilvG at 937.739 kb on - strand, within ilvG at 937.742 kb on + strand, within ilvG at 937.742 kb on + strand, within ilvG at 937.742 kb on + strand, within ilvG at 937.743 kb on - strand, within ilvG at 937.809 kb on - strand, within ilvG
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 934,441 + hdfR BNILDI_04715 0.40 +0.5 934,442 - hdfR BNILDI_04715 0.40 -0.2 934,443 + hdfR BNILDI_04715 0.40 -0.4 934,443 + hdfR BNILDI_04715 0.40 -0.5 934,444 - hdfR BNILDI_04715 0.40 +1.3 934,480 + hdfR BNILDI_04715 0.44 +0.6 934,511 - hdfR BNILDI_04715 0.48 +1.3 934,586 + hdfR BNILDI_04715 0.57 -0.9 934,586 + hdfR BNILDI_04715 0.57 -0.2 934,587 - hdfR BNILDI_04715 0.57 +0.3 934,636 + hdfR BNILDI_04715 0.63 +0.9 934,642 + hdfR BNILDI_04715 0.63 +0.1 934,642 + hdfR BNILDI_04715 0.63 -0.3 934,643 - hdfR BNILDI_04715 0.64 -1.7 934,643 - hdfR BNILDI_04715 0.64 -1.2 934,643 - hdfR BNILDI_04715 0.64 +0.9 934,643 - hdfR BNILDI_04715 0.64 +2.7 934,749 + hdfR BNILDI_04715 0.76 -0.1 934,749 + hdfR BNILDI_04715 0.76 +0.2 934,913 - +0.5 934,967 - +1.6 935,013 + -0.1 935,036 + +1.2 935,036 + -0.9 935,036 + +0.2 935,037 - -0.2 935,254 + maoP BNILDI_04720 0.55 +0.0 935,307 + maoP BNILDI_04720 0.71 -1.2 935,307 + maoP BNILDI_04720 0.71 +0.1 935,307 + maoP BNILDI_04720 0.71 +1.5 935,307 + maoP BNILDI_04720 0.71 -0.1 935,308 - maoP BNILDI_04720 0.71 +0.3 935,308 - maoP BNILDI_04720 0.71 -1.8 935,308 - maoP BNILDI_04720 0.71 -0.6 935,308 - maoP BNILDI_04720 0.71 -0.7 935,308 - maoP BNILDI_04720 0.71 +0.2 935,309 + maoP BNILDI_04720 0.71 +0.1 935,309 + maoP BNILDI_04720 0.71 +0.2 935,310 - maoP BNILDI_04720 0.72 +0.1 935,310 - maoP BNILDI_04720 0.72 -0.2 935,386 - -0.4 935,386 - +0.5 935,484 + -0.2 935,484 + +0.8 935,485 - +0.5 935,485 - -0.8 935,685 + yifB BNILDI_04725 0.17 +0.5 935,723 - yifB BNILDI_04725 0.19 +3.1 935,769 + yifB BNILDI_04725 0.22 +0.3 935,770 - yifB BNILDI_04725 0.22 -0.1 935,853 - yifB BNILDI_04725 0.28 +0.9 935,857 + yifB BNILDI_04725 0.28 +1.4 935,857 + yifB BNILDI_04725 0.28 +2.6 935,857 + yifB BNILDI_04725 0.28 +1.5 935,857 + yifB BNILDI_04725 0.28 +0.2 935,857 + yifB BNILDI_04725 0.28 +0.0 935,857 + yifB BNILDI_04725 0.28 -1.3 935,858 - yifB BNILDI_04725 0.28 -1.0 935,858 - yifB BNILDI_04725 0.28 +1.0 935,858 - yifB BNILDI_04725 0.28 -0.5 935,858 - yifB BNILDI_04725 0.28 +0.7 935,858 - yifB BNILDI_04725 0.28 -0.4 936,024 + yifB BNILDI_04725 0.39 +0.4 936,024 + yifB BNILDI_04725 0.39 +2.4 936,024 + yifB BNILDI_04725 0.39 -0.8 936,197 - yifB BNILDI_04725 0.50 -0.6 936,205 + yifB BNILDI_04725 0.51 +0.0 936,205 + yifB BNILDI_04725 0.51 -0.6 936,206 - yifB BNILDI_04725 0.51 -0.4 936,206 - yifB BNILDI_04725 0.51 +0.7 936,206 - yifB BNILDI_04725 0.51 -2.7 936,241 + yifB BNILDI_04725 0.53 +0.4 936,241 + yifB BNILDI_04725 0.53 +0.0 936,241 + yifB BNILDI_04725 0.53 -2.5 936,242 - yifB BNILDI_04725 0.53 +1.7 936,261 + yifB BNILDI_04725 0.55 -1.3 936,265 - yifB BNILDI_04725 0.55 -0.8 936,285 + yifB BNILDI_04725 0.56 +0.0 936,285 + yifB BNILDI_04725 0.56 -0.0 936,286 - yifB BNILDI_04725 0.56 -0.9 936,394 + yifB BNILDI_04725 0.63 -0.6 936,445 - yifB BNILDI_04725 0.67 +0.8 936,509 - yifB BNILDI_04725 0.71 -2.1 936,509 - yifB BNILDI_04725 0.71 -1.2 936,509 - yifB BNILDI_04725 0.71 -1.2 936,529 - yifB BNILDI_04725 0.72 -0.1 936,561 + yifB BNILDI_04725 0.74 +1.4 936,561 + yifB BNILDI_04725 0.74 -1.6 936,562 - yifB BNILDI_04725 0.74 +1.2 936,565 - yifB BNILDI_04725 0.75 -0.0 936,649 + yifB BNILDI_04725 0.80 -1.3 936,650 - yifB BNILDI_04725 0.80 -1.1 936,654 + yifB BNILDI_04725 0.80 +1.4 936,703 + yifB BNILDI_04725 0.84 +0.5 936,703 + yifB BNILDI_04725 0.84 -1.1 936,704 - yifB BNILDI_04725 0.84 +3.0 936,704 - yifB BNILDI_04725 0.84 +0.4 936,704 - yifB BNILDI_04725 0.84 +0.4 936,704 - yifB BNILDI_04725 0.84 -0.8 936,779 + yifB BNILDI_04725 0.89 +0.3 936,842 - -0.1 936,857 - -0.2 936,879 + -1.5 936,879 + -0.4 936,879 + -1.6 936,880 - -0.1 936,880 - +0.7 936,880 - +0.5 936,884 - -1.6 936,884 - +0.6 936,884 - -0.2 936,884 - +1.8 936,911 - +0.8 936,951 + -0.6 936,951 + +1.9 936,951 + +0.7 936,951 + -0.6 936,952 - -1.0 936,952 - +0.1 936,973 + +1.4 936,973 + -2.0 937,112 + +0.0 937,112 + -2.1 937,113 - +1.8 937,260 - +0.4 937,327 + -1.4 937,400 + -1.5 937,422 + -0.6 937,538 - -0.2 937,538 - +0.1 937,542 - +0.1 937,542 - +0.3 937,564 + -1.1 937,565 - -1.1 937,645 - -0.7 937,645 - +2.9 937,738 + ilvG BNILDI_04735 0.12 +0.8 937,738 + ilvG BNILDI_04735 0.12 +0.0 937,739 - ilvG BNILDI_04735 0.12 -1.2 937,739 - ilvG BNILDI_04735 0.12 +1.0 937,742 + ilvG BNILDI_04735 0.12 -0.5 937,742 + ilvG BNILDI_04735 0.12 +0.2 937,742 + ilvG BNILDI_04735 0.12 +0.4 937,743 - ilvG BNILDI_04735 0.12 -2.0 937,809 - ilvG BNILDI_04735 0.16 +0.8
Or see this region's nucleotide sequence