Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yicL and nlpA are separated by 3 nucleotides nlpA and yicS are separated by 221 nucleotides yicS and nepI are separated by 40 nucleotides
BNILDI_04140: yicL - carboxylate/amino acid/amine transporter, at 820,586 to 821,509
yicL
BNILDI_04145: nlpA - lipoprotein NlpA, at 821,513 to 822,331
nlpA
BNILDI_04150: yicS - Uncharacterized protein YicS, at 822,553 to 822,846
yicS
BNILDI_04155: nepI - purine ribonucleoside efflux pump NepI, at 822,887 to 824,125
nepI
Position (kb) 821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 820.552 kb on + strand at 820.552 kb on + strand at 820.553 kb on - strand at 820.557 kb on - strand at 820.557 kb on - strand at 820.664 kb on + strand at 820.664 kb on + strand at 820.665 kb on - strand at 820.665 kb on - strand at 820.665 kb on - strand at 820.705 kb on + strand, within yicL at 820.781 kb on - strand, within yicL at 820.792 kb on + strand, within yicL at 820.843 kb on - strand, within yicL at 821.027 kb on - strand, within yicL at 821.099 kb on + strand, within yicL at 821.100 kb on - strand, within yicL at 821.100 kb on - strand, within yicL at 821.100 kb on - strand, within yicL at 821.100 kb on - strand, within yicL at 821.108 kb on + strand, within yicL at 821.270 kb on - strand, within yicL at 821.310 kb on + strand, within yicL at 821.355 kb on + strand, within yicL at 821.356 kb on - strand, within yicL at 821.356 kb on - strand, within yicL at 821.367 kb on + strand, within yicL at 821.367 kb on + strand, within yicL at 821.617 kb on + strand, within nlpA at 821.617 kb on + strand, within nlpA at 821.617 kb on + strand, within nlpA at 821.618 kb on - strand, within nlpA at 821.649 kb on + strand, within nlpA at 821.650 kb on - strand, within nlpA at 821.663 kb on - strand, within nlpA at 821.675 kb on + strand, within nlpA at 821.715 kb on + strand, within nlpA at 821.715 kb on + strand, within nlpA at 821.792 kb on - strand, within nlpA at 821.837 kb on + strand, within nlpA at 821.838 kb on - strand, within nlpA at 821.889 kb on - strand, within nlpA at 821.949 kb on - strand, within nlpA at 822.025 kb on + strand, within nlpA at 822.025 kb on + strand, within nlpA at 822.026 kb on - strand, within nlpA at 822.026 kb on - strand, within nlpA at 822.159 kb on + strand, within nlpA at 822.160 kb on - strand, within nlpA at 822.218 kb on - strand, within nlpA at 822.346 kb on - strand at 822.355 kb on + strand at 822.356 kb on - strand at 822.356 kb on - strand at 822.364 kb on - strand at 822.366 kb on - strand at 822.409 kb on - strand at 822.437 kb on + strand at 822.508 kb on + strand at 822.508 kb on + strand at 822.509 kb on - strand at 822.509 kb on - strand at 822.514 kb on + strand at 822.515 kb on - strand at 822.515 kb on - strand at 822.609 kb on - strand, within yicS at 822.610 kb on + strand, within yicS at 822.628 kb on - strand, within yicS at 822.705 kb on - strand, within yicS at 822.728 kb on + strand, within yicS at 822.729 kb on - strand, within yicS at 822.759 kb on + strand, within yicS at 822.760 kb on - strand, within yicS at 822.761 kb on + strand, within yicS at 822.762 kb on - strand, within yicS at 822.762 kb on - strand, within yicS at 822.790 kb on - strand, within yicS at 822.793 kb on - strand, within yicS at 822.827 kb on + strand at 822.827 kb on + strand at 822.828 kb on - strand at 822.845 kb on - strand at 822.845 kb on - strand at 822.845 kb on - strand at 822.845 kb on - strand at 822.860 kb on + strand at 822.861 kb on - strand at 822.861 kb on - strand at 822.979 kb on + strand at 822.980 kb on - strand at 823.018 kb on + strand, within nepI at 823.021 kb on + strand, within nepI at 823.022 kb on - strand, within nepI at 823.048 kb on + strand, within nepI at 823.049 kb on - strand, within nepI at 823.049 kb on - strand, within nepI at 823.166 kb on - strand, within nepI at 823.209 kb on - strand, within nepI at 823.273 kb on + strand, within nepI
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 820,552 + +0.4 820,552 + -2.3 820,553 - +1.3 820,557 - +2.9 820,557 - -0.1 820,664 + -0.5 820,664 + -0.4 820,665 - -0.0 820,665 - -0.7 820,665 - +0.7 820,705 + yicL BNILDI_04140 0.13 -0.3 820,781 - yicL BNILDI_04140 0.21 -0.9 820,792 + yicL BNILDI_04140 0.22 -0.7 820,843 - yicL BNILDI_04140 0.28 -0.2 821,027 - yicL BNILDI_04140 0.48 -1.6 821,099 + yicL BNILDI_04140 0.56 -1.7 821,100 - yicL BNILDI_04140 0.56 -0.7 821,100 - yicL BNILDI_04140 0.56 -0.0 821,100 - yicL BNILDI_04140 0.56 -2.4 821,100 - yicL BNILDI_04140 0.56 -1.0 821,108 + yicL BNILDI_04140 0.56 -0.6 821,270 - yicL BNILDI_04140 0.74 +0.2 821,310 + yicL BNILDI_04140 0.78 +0.7 821,355 + yicL BNILDI_04140 0.83 -1.5 821,356 - yicL BNILDI_04140 0.83 +0.1 821,356 - yicL BNILDI_04140 0.83 -0.8 821,367 + yicL BNILDI_04140 0.85 -0.0 821,367 + yicL BNILDI_04140 0.85 +0.7 821,617 + nlpA BNILDI_04145 0.13 -0.5 821,617 + nlpA BNILDI_04145 0.13 -0.8 821,617 + nlpA BNILDI_04145 0.13 +0.1 821,618 - nlpA BNILDI_04145 0.13 -0.2 821,649 + nlpA BNILDI_04145 0.17 +1.1 821,650 - nlpA BNILDI_04145 0.17 -1.1 821,663 - nlpA BNILDI_04145 0.18 +2.3 821,675 + nlpA BNILDI_04145 0.20 +0.3 821,715 + nlpA BNILDI_04145 0.25 -0.7 821,715 + nlpA BNILDI_04145 0.25 +0.3 821,792 - nlpA BNILDI_04145 0.34 +0.5 821,837 + nlpA BNILDI_04145 0.40 -0.9 821,838 - nlpA BNILDI_04145 0.40 -0.4 821,889 - nlpA BNILDI_04145 0.46 +1.0 821,949 - nlpA BNILDI_04145 0.53 -0.8 822,025 + nlpA BNILDI_04145 0.63 +0.3 822,025 + nlpA BNILDI_04145 0.63 +0.1 822,026 - nlpA BNILDI_04145 0.63 -0.0 822,026 - nlpA BNILDI_04145 0.63 +0.5 822,159 + nlpA BNILDI_04145 0.79 -0.7 822,160 - nlpA BNILDI_04145 0.79 +0.7 822,218 - nlpA BNILDI_04145 0.86 +0.5 822,346 - -2.4 822,355 + +0.7 822,356 - -0.9 822,356 - +0.5 822,364 - -0.7 822,366 - -0.3 822,409 - -2.1 822,437 + -2.0 822,508 + -3.1 822,508 + -1.3 822,509 - +1.3 822,509 - +0.2 822,514 + -0.6 822,515 - -0.7 822,515 - +0.2 822,609 - yicS BNILDI_04150 0.19 +3.3 822,610 + yicS BNILDI_04150 0.19 -0.7 822,628 - yicS BNILDI_04150 0.26 -0.0 822,705 - yicS BNILDI_04150 0.52 -2.4 822,728 + yicS BNILDI_04150 0.60 +0.3 822,729 - yicS BNILDI_04150 0.60 -0.4 822,759 + yicS BNILDI_04150 0.70 -1.2 822,760 - yicS BNILDI_04150 0.70 -1.7 822,761 + yicS BNILDI_04150 0.71 -1.3 822,762 - yicS BNILDI_04150 0.71 +0.0 822,762 - yicS BNILDI_04150 0.71 +0.7 822,790 - yicS BNILDI_04150 0.81 -1.2 822,793 - yicS BNILDI_04150 0.82 -0.1 822,827 + +1.6 822,827 + -1.0 822,828 - -0.0 822,845 - +2.0 822,845 - -0.6 822,845 - -0.7 822,845 - -1.0 822,860 + +1.2 822,861 - +1.7 822,861 - -0.0 822,979 + -1.5 822,980 - -0.4 823,018 + nepI BNILDI_04155 0.11 -1.0 823,021 + nepI BNILDI_04155 0.11 -0.1 823,022 - nepI BNILDI_04155 0.11 -2.2 823,048 + nepI BNILDI_04155 0.13 -1.7 823,049 - nepI BNILDI_04155 0.13 -2.5 823,049 - nepI BNILDI_04155 0.13 +0.5 823,166 - nepI BNILDI_04155 0.23 -0.4 823,209 - nepI BNILDI_04155 0.26 +0.4 823,273 + nepI BNILDI_04155 0.31 -1.2
Or see this region's nucleotide sequence