Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mtlD and mtlR overlap by 1 nucleotides mtlR and yibT are separated by 11 nucleotides yibT and yibL are separated by 284 nucleotides
BNILDI_03825: mtlD - mannitol-1-phosphate 5-dehydrogenase, at 753,167 to 754,315
mtlD
BNILDI_03830: mtlR - mannitol operon repressor MtlR, at 754,315 to 754,902
mtlR
BNILDI_03835: yibT - Uncharacterized protein YibT, at 754,914 to 755,123
yibT
BNILDI_03840: yibL - YibL family ribosome-associated protein, at 755,408 to 755,770
yibL
Position (kb) 754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 753.983 kb on + strand, within mtlD at 754.035 kb on + strand, within mtlD at 754.301 kb on - strand at 754.534 kb on + strand, within mtlR at 754.534 kb on + strand, within mtlR at 754.535 kb on - strand, within mtlR at 754.535 kb on - strand, within mtlR at 754.535 kb on - strand, within mtlR at 754.535 kb on - strand, within mtlR at 754.693 kb on + strand, within mtlR at 754.694 kb on - strand, within mtlR at 754.694 kb on - strand, within mtlR at 754.796 kb on - strand, within mtlR at 754.796 kb on - strand, within mtlR at 754.796 kb on - strand, within mtlR at 754.915 kb on + strand at 754.915 kb on + strand at 754.957 kb on + strand, within yibT at 754.958 kb on - strand, within yibT at 754.958 kb on - strand, within yibT at 754.971 kb on + strand, within yibT at 754.972 kb on - strand, within yibT at 754.972 kb on - strand, within yibT at 754.972 kb on - strand, within yibT at 754.975 kb on + strand, within yibT at 754.975 kb on + strand, within yibT at 754.975 kb on + strand, within yibT at 754.976 kb on - strand, within yibT at 754.976 kb on - strand, within yibT at 754.976 kb on - strand, within yibT at 755.042 kb on - strand, within yibT at 755.130 kb on - strand at 755.130 kb on - strand at 755.130 kb on - strand at 755.137 kb on + strand at 755.174 kb on - strand at 755.369 kb on - strand at 755.379 kb on - strand at 755.510 kb on + strand, within yibL at 755.768 kb on + strand at 755.769 kb on - strand at 755.797 kb on - strand at 755.883 kb on - strand at 755.940 kb on + strand at 755.940 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 753,983 + mtlD BNILDI_03825 0.71 -2.3 754,035 + mtlD BNILDI_03825 0.76 +1.1 754,301 - -0.6 754,534 + mtlR BNILDI_03830 0.37 +0.3 754,534 + mtlR BNILDI_03830 0.37 -1.0 754,535 - mtlR BNILDI_03830 0.37 -0.2 754,535 - mtlR BNILDI_03830 0.37 +0.3 754,535 - mtlR BNILDI_03830 0.37 -0.7 754,535 - mtlR BNILDI_03830 0.37 -0.3 754,693 + mtlR BNILDI_03830 0.64 +1.3 754,694 - mtlR BNILDI_03830 0.64 -1.1 754,694 - mtlR BNILDI_03830 0.64 -0.3 754,796 - mtlR BNILDI_03830 0.82 +1.4 754,796 - mtlR BNILDI_03830 0.82 -1.0 754,796 - mtlR BNILDI_03830 0.82 +0.3 754,915 + -1.8 754,915 + -0.5 754,957 + yibT BNILDI_03835 0.20 +0.3 754,958 - yibT BNILDI_03835 0.21 -0.6 754,958 - yibT BNILDI_03835 0.21 +0.7 754,971 + yibT BNILDI_03835 0.27 -1.4 754,972 - yibT BNILDI_03835 0.28 +0.5 754,972 - yibT BNILDI_03835 0.28 -0.4 754,972 - yibT BNILDI_03835 0.28 -2.9 754,975 + yibT BNILDI_03835 0.29 -1.0 754,975 + yibT BNILDI_03835 0.29 -0.7 754,975 + yibT BNILDI_03835 0.29 -0.4 754,976 - yibT BNILDI_03835 0.30 -1.0 754,976 - yibT BNILDI_03835 0.30 +0.3 754,976 - yibT BNILDI_03835 0.30 -1.0 755,042 - yibT BNILDI_03835 0.61 -0.7 755,130 - -1.4 755,130 - -0.4 755,130 - +1.5 755,137 + +0.3 755,174 - -0.6 755,369 - +0.7 755,379 - -1.0 755,510 + yibL BNILDI_03840 0.28 -1.3 755,768 + +1.6 755,769 - +0.4 755,797 - +1.1 755,883 - +0.1 755,940 + +1.3 755,940 + -0.0
Or see this region's nucleotide sequence