Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pqqL and dctA are separated by 220 nucleotides dctA and hmsP are separated by 182 nucleotides
BNILDI_03390: pqqL - Insulinase (Peptidase family M16), at 660,150 to 661,646
pqqL
BNILDI_03395: dctA - C4-dicarboxylate transporter DctC, at 661,867 to 663,153
dctA
BNILDI_03400: hmsP - biofilm formation regulator HmsP, at 663,336 to 665,285
hmsP
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.084 kb on - strand, within pqqL at 661.128 kb on - strand, within pqqL at 661.128 kb on - strand, within pqqL at 661.128 kb on - strand, within pqqL at 661.225 kb on + strand, within pqqL at 661.226 kb on - strand, within pqqL at 661.226 kb on - strand, within pqqL at 661.226 kb on - strand, within pqqL at 661.226 kb on - strand, within pqqL at 661.294 kb on + strand, within pqqL at 661.295 kb on - strand, within pqqL at 661.295 kb on - strand, within pqqL at 661.295 kb on - strand, within pqqL at 661.295 kb on - strand, within pqqL at 661.295 kb on - strand, within pqqL at 661.326 kb on - strand, within pqqL at 661.417 kb on + strand, within pqqL at 661.521 kb on + strand at 661.521 kb on + strand at 661.664 kb on + strand at 661.665 kb on - strand at 661.665 kb on - strand at 661.703 kb on + strand at 661.769 kb on + strand at 661.792 kb on + strand at 661.793 kb on - strand at 661.793 kb on - strand at 661.793 kb on - strand at 661.855 kb on + strand at 661.856 kb on - strand at 661.856 kb on - strand at 661.856 kb on - strand at 661.868 kb on + strand at 661.869 kb on - strand at 661.876 kb on + strand at 661.876 kb on + strand at 661.909 kb on - strand at 661.909 kb on - strand at 661.956 kb on + strand at 661.957 kb on - strand at 662.019 kb on + strand, within dctA at 662.232 kb on - strand, within dctA at 662.232 kb on - strand, within dctA at 662.365 kb on + strand, within dctA at 662.391 kb on - strand, within dctA at 662.410 kb on - strand, within dctA at 662.464 kb on - strand, within dctA at 662.469 kb on + strand, within dctA at 662.470 kb on - strand, within dctA at 662.474 kb on + strand, within dctA at 662.475 kb on - strand, within dctA at 662.475 kb on - strand, within dctA at 662.484 kb on + strand, within dctA at 662.484 kb on + strand, within dctA at 662.680 kb on + strand, within dctA at 662.795 kb on + strand, within dctA at 662.875 kb on - strand, within dctA at 662.875 kb on - strand, within dctA at 662.916 kb on - strand, within dctA at 662.916 kb on - strand, within dctA at 662.916 kb on - strand, within dctA at 662.981 kb on - strand, within dctA at 662.989 kb on - strand, within dctA at 663.018 kb on + strand, within dctA at 663.018 kb on + strand, within dctA at 663.064 kb on + strand at 663.135 kb on + strand at 663.135 kb on + strand at 663.136 kb on - strand at 663.337 kb on + strand at 663.338 kb on - strand at 663.338 kb on - strand at 663.352 kb on + strand at 663.353 kb on - strand at 663.478 kb on - strand at 663.478 kb on - strand at 663.503 kb on + strand at 663.503 kb on + strand at 663.503 kb on + strand at 663.504 kb on - strand at 663.524 kb on + strand at 663.524 kb on + strand at 663.525 kb on - strand at 663.525 kb on - strand at 663.525 kb on - strand at 663.704 kb on + strand, within hmsP at 663.839 kb on + strand, within hmsP at 663.939 kb on + strand, within hmsP
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 661,084 - pqqL BNILDI_03390 0.62 -1.0 661,128 - pqqL BNILDI_03390 0.65 -2.0 661,128 - pqqL BNILDI_03390 0.65 -0.8 661,128 - pqqL BNILDI_03390 0.65 -0.4 661,225 + pqqL BNILDI_03390 0.72 -0.7 661,226 - pqqL BNILDI_03390 0.72 -0.0 661,226 - pqqL BNILDI_03390 0.72 -2.8 661,226 - pqqL BNILDI_03390 0.72 +0.7 661,226 - pqqL BNILDI_03390 0.72 -1.7 661,294 + pqqL BNILDI_03390 0.76 -0.6 661,295 - pqqL BNILDI_03390 0.76 +0.6 661,295 - pqqL BNILDI_03390 0.76 +1.0 661,295 - pqqL BNILDI_03390 0.76 -2.4 661,295 - pqqL BNILDI_03390 0.76 -0.3 661,295 - pqqL BNILDI_03390 0.76 +0.7 661,326 - pqqL BNILDI_03390 0.79 -1.5 661,417 + pqqL BNILDI_03390 0.85 +2.5 661,521 + -0.0 661,521 + -0.3 661,664 + -1.9 661,665 - -1.3 661,665 - +1.5 661,703 + -0.5 661,769 + -0.6 661,792 + +0.7 661,793 - -0.6 661,793 - +1.1 661,793 - -0.0 661,855 + -1.6 661,856 - +0.3 661,856 - +0.7 661,856 - +2.6 661,868 + +2.3 661,869 - -1.0 661,876 + -0.3 661,876 + -1.2 661,909 - +0.6 661,909 - +0.3 661,956 + -0.4 661,957 - +0.1 662,019 + dctA BNILDI_03395 0.12 +1.3 662,232 - dctA BNILDI_03395 0.28 -1.6 662,232 - dctA BNILDI_03395 0.28 +1.1 662,365 + dctA BNILDI_03395 0.39 -0.7 662,391 - dctA BNILDI_03395 0.41 -0.0 662,410 - dctA BNILDI_03395 0.42 -0.4 662,464 - dctA BNILDI_03395 0.46 -1.2 662,469 + dctA BNILDI_03395 0.47 -0.2 662,470 - dctA BNILDI_03395 0.47 +2.3 662,474 + dctA BNILDI_03395 0.47 +1.1 662,475 - dctA BNILDI_03395 0.47 -0.9 662,475 - dctA BNILDI_03395 0.47 -2.4 662,484 + dctA BNILDI_03395 0.48 +0.1 662,484 + dctA BNILDI_03395 0.48 +1.8 662,680 + dctA BNILDI_03395 0.63 +0.1 662,795 + dctA BNILDI_03395 0.72 -1.0 662,875 - dctA BNILDI_03395 0.78 +1.0 662,875 - dctA BNILDI_03395 0.78 -1.9 662,916 - dctA BNILDI_03395 0.82 -0.1 662,916 - dctA BNILDI_03395 0.82 -2.0 662,916 - dctA BNILDI_03395 0.82 -3.3 662,981 - dctA BNILDI_03395 0.87 -0.4 662,989 - dctA BNILDI_03395 0.87 +0.5 663,018 + dctA BNILDI_03395 0.89 +1.4 663,018 + dctA BNILDI_03395 0.89 +1.8 663,064 + -0.3 663,135 + +2.3 663,135 + -0.8 663,136 - +2.0 663,337 + -2.1 663,338 - +1.7 663,338 - -0.3 663,352 + -0.9 663,353 - +0.6 663,478 - +1.1 663,478 - -1.3 663,503 + +0.8 663,503 + +0.9 663,503 + -0.7 663,504 - -1.5 663,524 + +0.7 663,524 + -1.2 663,525 - +0.0 663,525 - -0.5 663,525 - -0.4 663,704 + hmsP BNILDI_03400 0.19 +0.9 663,839 + hmsP BNILDI_03400 0.26 -0.0 663,939 + hmsP BNILDI_03400 0.31 +0.1
Or see this region's nucleotide sequence