Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhhS and yhhT are separated by 89 nucleotides yhhT and acpT are separated by 54 nucleotides acpT and nikA are separated by 110 nucleotides
BNILDI_03055: yhhS - Uncharacterized MFS-type transporter YhhS, at 590,392 to 591,651
yhhS
BNILDI_03060: yhhT - Putative transport protein YhhT, at 591,741 to 592,790
yhhT
BNILDI_03065: acpT - 4'-phosphopantetheinyl transferase AcpT, at 592,845 to 593,432
acpT
BNILDI_03070: nikA - nickel ABC transporter substrate-binding protein, at 593,543 to 595,117
nikA
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 590.761 kb on + strand, within yhhS at 590.762 kb on - strand, within yhhS at 590.768 kb on - strand, within yhhS at 590.830 kb on - strand, within yhhS at 590.943 kb on - strand, within yhhS at 591.058 kb on + strand, within yhhS at 591.089 kb on + strand, within yhhS at 591.262 kb on + strand, within yhhS at 591.262 kb on + strand, within yhhS at 591.263 kb on - strand, within yhhS at 591.263 kb on - strand, within yhhS at 591.265 kb on + strand, within yhhS at 591.422 kb on + strand, within yhhS at 591.535 kb on - strand at 591.686 kb on + strand at 591.686 kb on + strand at 591.716 kb on + strand at 591.716 kb on + strand at 591.717 kb on - strand at 591.917 kb on - strand, within yhhT at 591.917 kb on - strand, within yhhT at 591.943 kb on + strand, within yhhT at 591.943 kb on + strand, within yhhT at 592.011 kb on - strand, within yhhT at 592.031 kb on + strand, within yhhT at 592.094 kb on + strand, within yhhT at 592.094 kb on + strand, within yhhT at 592.298 kb on - strand, within yhhT at 592.298 kb on - strand, within yhhT at 592.310 kb on + strand, within yhhT at 592.345 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.443 kb on + strand, within yhhT at 592.444 kb on - strand, within yhhT at 592.511 kb on + strand, within yhhT at 592.511 kb on + strand, within yhhT at 592.515 kb on + strand, within yhhT at 592.523 kb on + strand, within yhhT at 592.547 kb on - strand, within yhhT at 592.576 kb on + strand, within yhhT at 592.624 kb on + strand, within yhhT at 592.625 kb on - strand, within yhhT at 592.640 kb on - strand, within yhhT at 592.675 kb on + strand, within yhhT at 592.676 kb on - strand, within yhhT at 592.676 kb on - strand, within yhhT at 592.676 kb on - strand, within yhhT at 592.804 kb on - strand at 592.845 kb on - strand at 592.845 kb on - strand at 592.848 kb on + strand at 592.848 kb on + strand at 592.849 kb on - strand at 593.001 kb on + strand, within acpT at 593.001 kb on + strand, within acpT at 593.002 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.057 kb on - strand, within acpT at 593.313 kb on + strand, within acpT at 593.314 kb on - strand, within acpT at 593.455 kb on + strand at 593.456 kb on - strand at 593.520 kb on + strand at 593.526 kb on - strand at 593.568 kb on + strand at 593.569 kb on - strand at 593.596 kb on + strand at 593.708 kb on + strand, within nikA at 593.726 kb on + strand, within nikA at 593.727 kb on - strand, within nikA at 593.789 kb on - strand, within nikA
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 590,761 + yhhS BNILDI_03055 0.29 -0.5 590,762 - yhhS BNILDI_03055 0.29 -1.3 590,768 - yhhS BNILDI_03055 0.30 +0.2 590,830 - yhhS BNILDI_03055 0.35 -0.1 590,943 - yhhS BNILDI_03055 0.44 -0.0 591,058 + yhhS BNILDI_03055 0.53 -0.2 591,089 + yhhS BNILDI_03055 0.55 -0.6 591,262 + yhhS BNILDI_03055 0.69 -1.6 591,262 + yhhS BNILDI_03055 0.69 +0.3 591,263 - yhhS BNILDI_03055 0.69 -2.2 591,263 - yhhS BNILDI_03055 0.69 +0.7 591,265 + yhhS BNILDI_03055 0.69 -0.1 591,422 + yhhS BNILDI_03055 0.82 +0.1 591,535 - -0.7 591,686 + -0.3 591,686 + -0.6 591,716 + -1.0 591,716 + -1.3 591,717 - -0.3 591,917 - yhhT BNILDI_03060 0.17 +2.0 591,917 - yhhT BNILDI_03060 0.17 +1.3 591,943 + yhhT BNILDI_03060 0.19 -1.4 591,943 + yhhT BNILDI_03060 0.19 -0.0 592,011 - yhhT BNILDI_03060 0.26 +1.3 592,031 + yhhT BNILDI_03060 0.28 -0.7 592,094 + yhhT BNILDI_03060 0.34 -0.7 592,094 + yhhT BNILDI_03060 0.34 +2.0 592,298 - yhhT BNILDI_03060 0.53 -1.9 592,298 - yhhT BNILDI_03060 0.53 -0.9 592,310 + yhhT BNILDI_03060 0.54 -0.2 592,345 + yhhT BNILDI_03060 0.58 -1.1 592,443 + yhhT BNILDI_03060 0.67 -0.3 592,443 + yhhT BNILDI_03060 0.67 -0.9 592,443 + yhhT BNILDI_03060 0.67 -3.1 592,443 + yhhT BNILDI_03060 0.67 +0.3 592,443 + yhhT BNILDI_03060 0.67 -1.4 592,443 + yhhT BNILDI_03060 0.67 +1.0 592,444 - yhhT BNILDI_03060 0.67 +3.0 592,511 + yhhT BNILDI_03060 0.73 -1.1 592,511 + yhhT BNILDI_03060 0.73 -1.7 592,515 + yhhT BNILDI_03060 0.74 -0.7 592,523 + yhhT BNILDI_03060 0.74 -0.8 592,547 - yhhT BNILDI_03060 0.77 -0.3 592,576 + yhhT BNILDI_03060 0.80 -0.3 592,624 + yhhT BNILDI_03060 0.84 -0.5 592,625 - yhhT BNILDI_03060 0.84 -0.5 592,640 - yhhT BNILDI_03060 0.86 -2.2 592,675 + yhhT BNILDI_03060 0.89 -0.5 592,676 - yhhT BNILDI_03060 0.89 -0.3 592,676 - yhhT BNILDI_03060 0.89 +0.5 592,676 - yhhT BNILDI_03060 0.89 -1.2 592,804 - -0.5 592,845 - +0.6 592,845 - -1.8 592,848 + +0.0 592,848 + -0.5 592,849 - +0.1 593,001 + acpT BNILDI_03065 0.27 +1.9 593,001 + acpT BNILDI_03065 0.27 -1.6 593,002 - acpT BNILDI_03065 0.27 -1.8 593,057 - acpT BNILDI_03065 0.36 +0.6 593,057 - acpT BNILDI_03065 0.36 -0.5 593,057 - acpT BNILDI_03065 0.36 -0.4 593,057 - acpT BNILDI_03065 0.36 +0.2 593,313 + acpT BNILDI_03065 0.80 -0.4 593,314 - acpT BNILDI_03065 0.80 +0.1 593,455 + -0.4 593,456 - -0.9 593,520 + -1.0 593,526 - +1.3 593,568 + -1.0 593,569 - +1.0 593,596 + -0.3 593,708 + nikA BNILDI_03070 0.10 -0.9 593,726 + nikA BNILDI_03070 0.12 -1.8 593,727 - nikA BNILDI_03070 0.12 -0.2 593,789 - nikA BNILDI_03070 0.16 +0.8
Or see this region's nucleotide sequence