Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yrbG and kdsD are separated by 13 nucleotides kdsD and kdsC are separated by 20 nucleotides kdsC and lptC overlap by 4 nucleotides
BNILDI_01765: yrbG - calcium/sodium antiporter, at 344,649 to 345,626
yrbG
BNILDI_01770: kdsD - arabinose-5-phosphate isomerase KdsD, at 345,640 to 346,626
kdsD
BNILDI_01775: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 346,647 to 347,213
kdsC
BNILDI_01780: lptC - LPS export ABC transporter periplasmic protein LptC, at 347,210 to 347,785
lptC
Position (kb) 345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 344.646 kb on + strand at 344.646 kb on + strand at 344.646 kb on + strand at 344.647 kb on - strand at 344.656 kb on + strand at 344.672 kb on - strand at 344.698 kb on - strand at 344.786 kb on + strand, within yrbG at 344.792 kb on + strand, within yrbG at 344.793 kb on - strand, within yrbG at 344.793 kb on - strand, within yrbG at 344.793 kb on - strand, within yrbG at 344.861 kb on + strand, within yrbG at 344.888 kb on + strand, within yrbG at 344.888 kb on + strand, within yrbG at 344.889 kb on - strand, within yrbG at 344.890 kb on + strand, within yrbG at 344.890 kb on + strand, within yrbG at 344.891 kb on - strand, within yrbG at 344.891 kb on - strand, within yrbG at 344.891 kb on - strand, within yrbG at 344.950 kb on + strand, within yrbG at 344.951 kb on - strand, within yrbG at 344.951 kb on - strand, within yrbG at 344.951 kb on - strand, within yrbG at 344.963 kb on - strand, within yrbG at 344.963 kb on - strand, within yrbG at 344.969 kb on - strand, within yrbG at 345.007 kb on - strand, within yrbG at 345.021 kb on - strand, within yrbG at 345.021 kb on - strand, within yrbG at 345.036 kb on - strand, within yrbG at 345.198 kb on - strand, within yrbG at 345.198 kb on - strand, within yrbG at 345.377 kb on + strand, within yrbG at 345.377 kb on + strand, within yrbG at 345.378 kb on - strand, within yrbG at 345.378 kb on - strand, within yrbG at 345.378 kb on - strand, within yrbG at 345.399 kb on - strand, within yrbG at 345.399 kb on - strand, within yrbG at 345.462 kb on + strand, within yrbG at 345.549 kb on - strand at 345.556 kb on + strand at 345.560 kb on - strand at 345.581 kb on - strand at 345.597 kb on + strand at 345.625 kb on - strand at 345.639 kb on + strand at 345.640 kb on - strand at 345.650 kb on + strand at 345.656 kb on + strand at 345.736 kb on + strand at 345.737 kb on - strand at 345.737 kb on - strand at 345.911 kb on + strand, within kdsD at 346.080 kb on + strand, within kdsD at 346.266 kb on + strand, within kdsD at 346.266 kb on + strand, within kdsD at 346.266 kb on + strand, within kdsD at 346.272 kb on + strand, within kdsD at 346.353 kb on + strand, within kdsD at 346.412 kb on + strand, within kdsD at 346.451 kb on + strand, within kdsD at 346.455 kb on + strand, within kdsD at 346.484 kb on + strand, within kdsD at 346.526 kb on + strand, within kdsD at 346.526 kb on + strand, within kdsD at 346.526 kb on + strand, within kdsD at 346.577 kb on + strand at 346.589 kb on + strand at 346.593 kb on + strand at 346.593 kb on + strand at 346.680 kb on + strand at 346.703 kb on + strand at 346.705 kb on + strand, within kdsC at 346.773 kb on + strand, within kdsC at 346.773 kb on + strand, within kdsC at 346.773 kb on + strand, within kdsC at 346.932 kb on + strand, within kdsC at 346.932 kb on + strand, within kdsC at 346.932 kb on + strand, within kdsC at 347.161 kb on + strand at 347.161 kb on + strand at 347.161 kb on + strand at 347.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 344,646 + +2.4 344,646 + +0.6 344,646 + +0.9 344,647 - -0.3 344,656 + +0.8 344,672 - +0.7 344,698 - -0.5 344,786 + yrbG BNILDI_01765 0.14 +0.6 344,792 + yrbG BNILDI_01765 0.15 -0.6 344,793 - yrbG BNILDI_01765 0.15 -0.5 344,793 - yrbG BNILDI_01765 0.15 -1.1 344,793 - yrbG BNILDI_01765 0.15 -0.1 344,861 + yrbG BNILDI_01765 0.22 +0.7 344,888 + yrbG BNILDI_01765 0.24 -0.8 344,888 + yrbG BNILDI_01765 0.24 +2.4 344,889 - yrbG BNILDI_01765 0.25 -1.0 344,890 + yrbG BNILDI_01765 0.25 -0.3 344,890 + yrbG BNILDI_01765 0.25 +0.2 344,891 - yrbG BNILDI_01765 0.25 +1.6 344,891 - yrbG BNILDI_01765 0.25 +3.1 344,891 - yrbG BNILDI_01765 0.25 -0.6 344,950 + yrbG BNILDI_01765 0.31 -0.4 344,951 - yrbG BNILDI_01765 0.31 -0.6 344,951 - yrbG BNILDI_01765 0.31 -0.5 344,951 - yrbG BNILDI_01765 0.31 -1.8 344,963 - yrbG BNILDI_01765 0.32 +0.2 344,963 - yrbG BNILDI_01765 0.32 +0.6 344,969 - yrbG BNILDI_01765 0.33 +1.9 345,007 - yrbG BNILDI_01765 0.37 -0.2 345,021 - yrbG BNILDI_01765 0.38 +0.5 345,021 - yrbG BNILDI_01765 0.38 -0.7 345,036 - yrbG BNILDI_01765 0.40 +0.0 345,198 - yrbG BNILDI_01765 0.56 -2.1 345,198 - yrbG BNILDI_01765 0.56 -1.3 345,377 + yrbG BNILDI_01765 0.74 -2.3 345,377 + yrbG BNILDI_01765 0.74 -1.5 345,378 - yrbG BNILDI_01765 0.75 -1.0 345,378 - yrbG BNILDI_01765 0.75 -2.4 345,378 - yrbG BNILDI_01765 0.75 +0.5 345,399 - yrbG BNILDI_01765 0.77 +1.4 345,399 - yrbG BNILDI_01765 0.77 -3.0 345,462 + yrbG BNILDI_01765 0.83 -1.3 345,549 - -0.9 345,556 + -0.6 345,560 - +0.0 345,581 - -2.2 345,597 + -1.4 345,625 - -1.2 345,639 + +2.4 345,640 - -1.7 345,650 + -0.4 345,656 + +2.1 345,736 + +0.8 345,737 - -2.4 345,737 - -2.6 345,911 + kdsD BNILDI_01770 0.27 +0.8 346,080 + kdsD BNILDI_01770 0.45 +2.2 346,266 + kdsD BNILDI_01770 0.63 -1.2 346,266 + kdsD BNILDI_01770 0.63 +1.4 346,266 + kdsD BNILDI_01770 0.63 -1.8 346,272 + kdsD BNILDI_01770 0.64 -0.3 346,353 + kdsD BNILDI_01770 0.72 -0.3 346,412 + kdsD BNILDI_01770 0.78 -2.0 346,451 + kdsD BNILDI_01770 0.82 -1.1 346,455 + kdsD BNILDI_01770 0.83 +0.0 346,484 + kdsD BNILDI_01770 0.86 -0.6 346,526 + kdsD BNILDI_01770 0.90 +1.4 346,526 + kdsD BNILDI_01770 0.90 -1.0 346,526 + kdsD BNILDI_01770 0.90 -0.1 346,577 + -2.4 346,589 + -0.0 346,593 + -2.8 346,593 + -0.7 346,680 + -2.9 346,703 + -1.5 346,705 + kdsC BNILDI_01775 0.10 +0.9 346,773 + kdsC BNILDI_01775 0.22 +2.4 346,773 + kdsC BNILDI_01775 0.22 -1.1 346,773 + kdsC BNILDI_01775 0.22 +0.8 346,932 + kdsC BNILDI_01775 0.50 -0.6 346,932 + kdsC BNILDI_01775 0.50 -2.0 346,932 + kdsC BNILDI_01775 0.50 +1.4 347,161 + +0.0 347,161 + -1.2 347,161 + -2.7 347,164 + +0.8
Or see this region's nucleotide sequence