Strain Fitness in Escherichia coli ECRC62 around BNILDI_00435

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttssF and BNILDI_00430 are separated by 3 nucleotidesBNILDI_00430 and BNILDI_00435 are separated by 34 nucleotidesBNILDI_00435 and hcp1,tssD1 are separated by 23 nucleotideshcp1,tssD1 and BNILDI_00445 are separated by 43 nucleotides BNILDI_00425: tssF - type VI secretion system baseplate subunit TssF, at 86,793 to 87,206 tssF BNILDI_00430: BNILDI_00430 - Type VI secretion protein, family, at 87,210 to 87,887 _00430 BNILDI_00435: BNILDI_00435 - ImpA domain protein, at 87,922 to 88,230 _00435 BNILDI_00440: hcp1,tssD1 - type VI secretion system protein, Hcp family, at 88,254 to 88,736 hcp1,tssD1 BNILDI_00445: BNILDI_00445 - Inner membrane protein yafU, at 88,780 to 89,505 _00445 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 87.029 kb on + strand, within tssFat 87.030 kb on - strand, within tssFat 87.030 kb on - strand, within tssFat 87.030 kb on - strand, within tssFat 87.032 kb on - strand, within tssFat 87.119 kb on + strand, within tssFat 87.120 kb on - strand, within tssFat 87.425 kb on + strand, within BNILDI_00430at 87.426 kb on - strand, within BNILDI_00430at 87.426 kb on - strand, within BNILDI_00430at 87.434 kb on - strand, within BNILDI_00430at 87.441 kb on - strand, within BNILDI_00430at 87.441 kb on - strand, within BNILDI_00430at 87.444 kb on + strand, within BNILDI_00430at 87.444 kb on + strand, within BNILDI_00430at 87.444 kb on + strand, within BNILDI_00430at 87.445 kb on - strand, within BNILDI_00430at 87.473 kb on + strand, within BNILDI_00430at 87.482 kb on + strand, within BNILDI_00430at 87.483 kb on - strand, within BNILDI_00430at 87.498 kb on - strand, within BNILDI_00430at 87.518 kb on - strand, within BNILDI_00430at 87.540 kb on - strand, within BNILDI_00430at 87.540 kb on - strand, within BNILDI_00430at 87.591 kb on - strand, within BNILDI_00430at 87.591 kb on - strand, within BNILDI_00430at 87.680 kb on + strand, within BNILDI_00430at 87.789 kb on + strand, within BNILDI_00430at 87.789 kb on + strand, within BNILDI_00430at 87.790 kb on - strand, within BNILDI_00430at 87.791 kb on + strand, within BNILDI_00430at 87.792 kb on - strand, within BNILDI_00430at 87.792 kb on - strand, within BNILDI_00430at 87.953 kb on + strand, within BNILDI_00435at 87.954 kb on - strand, within BNILDI_00435at 87.971 kb on + strand, within BNILDI_00435at 87.972 kb on - strand, within BNILDI_00435at 88.010 kb on - strand, within BNILDI_00435at 88.084 kb on + strand, within BNILDI_00435at 88.262 kb on + strandat 88.269 kb on + strandat 89.135 kb on - strand, within BNILDI_00445at 89.149 kb on + strand, within BNILDI_00445at 89.227 kb on - strand, within BNILDI_00445

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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87,029 + tssF BNILDI_00425 0.57 +0.1
87,030 - tssF BNILDI_00425 0.57 -0.8
87,030 - tssF BNILDI_00425 0.57 -2.6
87,030 - tssF BNILDI_00425 0.57 -1.1
87,032 - tssF BNILDI_00425 0.58 +0.2
87,119 + tssF BNILDI_00425 0.79 +0.7
87,120 - tssF BNILDI_00425 0.79 +1.8
87,425 + BNILDI_00430 0.32 +0.3
87,426 - BNILDI_00430 0.32 -0.4
87,426 - BNILDI_00430 0.32 +0.9
87,434 - BNILDI_00430 0.33 +1.3
87,441 - BNILDI_00430 0.34 -0.1
87,441 - BNILDI_00430 0.34 +1.2
87,444 + BNILDI_00430 0.35 +0.4
87,444 + BNILDI_00430 0.35 +1.1
87,444 + BNILDI_00430 0.35 +0.6
87,445 - BNILDI_00430 0.35 +0.1
87,473 + BNILDI_00430 0.39 -0.6
87,482 + BNILDI_00430 0.40 +0.8
87,483 - BNILDI_00430 0.40 +0.1
87,498 - BNILDI_00430 0.42 +0.3
87,518 - BNILDI_00430 0.45 +0.1
87,540 - BNILDI_00430 0.49 -0.2
87,540 - BNILDI_00430 0.49 -1.5
87,591 - BNILDI_00430 0.56 -1.5
87,591 - BNILDI_00430 0.56 -0.3
87,680 + BNILDI_00430 0.69 -1.1
87,789 + BNILDI_00430 0.85 +2.1
87,789 + BNILDI_00430 0.85 -0.2
87,790 - BNILDI_00430 0.86 -0.1
87,791 + BNILDI_00430 0.86 +0.8
87,792 - BNILDI_00430 0.86 -0.9
87,792 - BNILDI_00430 0.86 +2.2
87,953 + BNILDI_00435 0.10 -0.2
87,954 - BNILDI_00435 0.10 +0.6
87,971 + BNILDI_00435 0.16 +1.3
87,972 - BNILDI_00435 0.16 -0.9
88,010 - BNILDI_00435 0.28 +0.4
88,084 + BNILDI_00435 0.52 +1.4
88,262 + -1.3
88,269 + +0.8
89,135 - BNILDI_00445 0.49 -0.7
89,149 + BNILDI_00445 0.51 +1.9
89,227 - BNILDI_00445 0.62 -1.4

Or see this region's nucleotide sequence