Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS16330

Experiment: Glucomannan (konjac) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS16315 and HMPREF1181_RS16320 are separated by 121 nucleotidesHMPREF1181_RS16320 and HMPREF1181_RS16325 are separated by 22 nucleotidesHMPREF1181_RS16325 and HMPREF1181_RS17670 are separated by 14 nucleotidesHMPREF1181_RS17670 and HMPREF1181_RS16330 are separated by 160 nucleotidesHMPREF1181_RS16330 and HMPREF1181_RS16335 overlap by 4 nucleotides HMPREF1181_RS16315: HMPREF1181_RS16315 - CinA family protein, at 104,993 to 105,460 _RS16315 HMPREF1181_RS16320: HMPREF1181_RS16320 - 50S ribosomal protein L28, at 105,582 to 105,842 _RS16320 HMPREF1181_RS16325: HMPREF1181_RS16325 - 50S ribosomal protein L33, at 105,865 to 106,053 _RS16325 HMPREF1181_RS17670: HMPREF1181_RS17670 - DUF4295 domain-containing protein, at 106,068 to 106,226 _RS17670 HMPREF1181_RS16330: HMPREF1181_RS16330 - signal recognition particle-docking protein FtsY, at 106,387 to 107,346 _RS16330 HMPREF1181_RS16335: HMPREF1181_RS16335 - 30S ribosomal protein S12 methylthiotransferase RimO, at 107,343 to 108,641 _RS16335 Position (kb) 106 107 108Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 105.409 kb on - strand, within HMPREF1181_RS16315at 105.445 kb on + strandat 105.445 kb on + strandat 105.445 kb on + strandat 105.446 kb on - strandat 106.256 kb on + strandat 107.374 kb on + strandat 107.486 kb on + strand, within HMPREF1181_RS16335at 107.532 kb on - strand, within HMPREF1181_RS16335at 107.611 kb on - strand, within HMPREF1181_RS16335at 107.703 kb on + strand, within HMPREF1181_RS16335at 107.723 kb on - strand, within HMPREF1181_RS16335at 107.729 kb on + strand, within HMPREF1181_RS16335at 107.796 kb on + strand, within HMPREF1181_RS16335at 107.810 kb on + strand, within HMPREF1181_RS16335at 107.811 kb on - strand, within HMPREF1181_RS16335at 107.932 kb on + strand, within HMPREF1181_RS16335at 107.938 kb on + strand, within HMPREF1181_RS16335at 107.938 kb on + strand, within HMPREF1181_RS16335at 107.942 kb on + strand, within HMPREF1181_RS16335at 107.942 kb on + strand, within HMPREF1181_RS16335at 107.942 kb on + strand, within HMPREF1181_RS16335at 107.942 kb on + strand, within HMPREF1181_RS16335at 107.943 kb on - strand, within HMPREF1181_RS16335at 108.005 kb on - strand, within HMPREF1181_RS16335at 108.005 kb on - strand, within HMPREF1181_RS16335at 108.015 kb on + strand, within HMPREF1181_RS16335at 108.081 kb on - strand, within HMPREF1181_RS16335at 108.086 kb on + strand, within HMPREF1181_RS16335at 108.086 kb on + strand, within HMPREF1181_RS16335at 108.087 kb on - strand, within HMPREF1181_RS16335at 108.107 kb on + strand, within HMPREF1181_RS16335at 108.119 kb on + strand, within HMPREF1181_RS16335at 108.159 kb on - strand, within HMPREF1181_RS16335at 108.222 kb on - strand, within HMPREF1181_RS16335at 108.332 kb on + strand, within HMPREF1181_RS16335at 108.333 kb on - strand, within HMPREF1181_RS16335at 108.333 kb on - strand, within HMPREF1181_RS16335at 108.333 kb on - strand, within HMPREF1181_RS16335at 108.336 kb on + strand, within HMPREF1181_RS16335at 108.336 kb on + strand, within HMPREF1181_RS16335

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucomannan (konjac) 2.5 mg/ml (C)
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105,409 - HMPREF1181_RS16315 0.89 -2.5
105,445 + -2.0
105,445 + -2.8
105,445 + +0.7
105,446 - +4.3
106,256 + -0.3
107,374 + -0.2
107,486 + HMPREF1181_RS16335 0.11 +0.7
107,532 - HMPREF1181_RS16335 0.15 +1.2
107,611 - HMPREF1181_RS16335 0.21 +0.6
107,703 + HMPREF1181_RS16335 0.28 -0.4
107,723 - HMPREF1181_RS16335 0.29 -0.7
107,729 + HMPREF1181_RS16335 0.30 +0.1
107,796 + HMPREF1181_RS16335 0.35 -0.1
107,810 + HMPREF1181_RS16335 0.36 -0.5
107,811 - HMPREF1181_RS16335 0.36 -0.7
107,932 + HMPREF1181_RS16335 0.45 +0.5
107,938 + HMPREF1181_RS16335 0.46 +1.6
107,938 + HMPREF1181_RS16335 0.46 +1.9
107,942 + HMPREF1181_RS16335 0.46 -1.9
107,942 + HMPREF1181_RS16335 0.46 +1.8
107,942 + HMPREF1181_RS16335 0.46 +0.9
107,942 + HMPREF1181_RS16335 0.46 +1.2
107,943 - HMPREF1181_RS16335 0.46 -2.9
108,005 - HMPREF1181_RS16335 0.51 -0.5
108,005 - HMPREF1181_RS16335 0.51 -3.7
108,015 + HMPREF1181_RS16335 0.52 +0.9
108,081 - HMPREF1181_RS16335 0.57 +0.6
108,086 + HMPREF1181_RS16335 0.57 -0.8
108,086 + HMPREF1181_RS16335 0.57 -1.9
108,087 - HMPREF1181_RS16335 0.57 -1.9
108,107 + HMPREF1181_RS16335 0.59 +2.4
108,119 + HMPREF1181_RS16335 0.60 +2.9
108,159 - HMPREF1181_RS16335 0.63 -2.3
108,222 - HMPREF1181_RS16335 0.68 -0.9
108,332 + HMPREF1181_RS16335 0.76 +2.4
108,333 - HMPREF1181_RS16335 0.76 -3.1
108,333 - HMPREF1181_RS16335 0.76 -2.8
108,333 - HMPREF1181_RS16335 0.76 -0.3
108,336 + HMPREF1181_RS16335 0.76 +3.1
108,336 + HMPREF1181_RS16335 0.76 +3.0

Or see this region's nucleotide sequence