Experiment: Locust bean gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06760 and HMPREF1181_RS06765 are separated by 23 nucleotides HMPREF1181_RS06765 and HMPREF1181_RS06770 are separated by 217 nucleotides HMPREF1181_RS06770 and HMPREF1181_RS06775 are separated by 4 nucleotides
HMPREF1181_RS06760: HMPREF1181_RS06760 - OmpA family protein, at 724,992 to 726,167
_RS06760
HMPREF1181_RS06765: HMPREF1181_RS06765 - hypothetical protein, at 726,191 to 728,437
_RS06765
HMPREF1181_RS06770: HMPREF1181_RS06770 - hypothetical protein, at 728,655 to 729,272
_RS06770
HMPREF1181_RS06775: HMPREF1181_RS06775 - helix-turn-helix transcriptional regulator, at 729,277 to 730,134
_RS06775
Position (kb) 726
727
728
729 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 725.197 kb on + strand, within HMPREF1181_RS06760 at 725.197 kb on + strand, within HMPREF1181_RS06760 at 725.336 kb on + strand, within HMPREF1181_RS06760 at 725.337 kb on - strand, within HMPREF1181_RS06760 at 725.449 kb on + strand, within HMPREF1181_RS06760 at 725.450 kb on - strand, within HMPREF1181_RS06760 at 725.450 kb on - strand, within HMPREF1181_RS06760 at 725.450 kb on - strand, within HMPREF1181_RS06760 at 725.744 kb on + strand, within HMPREF1181_RS06760 at 725.745 kb on - strand, within HMPREF1181_RS06760 at 725.837 kb on + strand, within HMPREF1181_RS06760 at 725.951 kb on - strand, within HMPREF1181_RS06760 at 725.993 kb on - strand, within HMPREF1181_RS06760 at 725.996 kb on + strand, within HMPREF1181_RS06760 at 725.996 kb on + strand, within HMPREF1181_RS06760 at 725.996 kb on + strand, within HMPREF1181_RS06760 at 725.997 kb on - strand, within HMPREF1181_RS06760 at 725.997 kb on - strand, within HMPREF1181_RS06760 at 725.998 kb on + strand, within HMPREF1181_RS06760 at 726.069 kb on + strand at 726.141 kb on + strand at 726.142 kb on - strand at 726.142 kb on - strand at 726.144 kb on + strand at 726.172 kb on - strand at 726.172 kb on - strand at 726.179 kb on + strand at 726.183 kb on + strand at 726.298 kb on - strand at 726.298 kb on - strand at 726.331 kb on + strand at 726.332 kb on - strand at 726.334 kb on - strand at 726.338 kb on + strand at 726.412 kb on + strand at 726.460 kb on + strand, within HMPREF1181_RS06765 at 726.500 kb on + strand, within HMPREF1181_RS06765 at 726.501 kb on - strand, within HMPREF1181_RS06765 at 726.609 kb on + strand, within HMPREF1181_RS06765 at 726.610 kb on - strand, within HMPREF1181_RS06765 at 726.610 kb on - strand, within HMPREF1181_RS06765 at 726.617 kb on - strand, within HMPREF1181_RS06765 at 726.666 kb on - strand, within HMPREF1181_RS06765 at 726.722 kb on + strand, within HMPREF1181_RS06765 at 726.776 kb on - strand, within HMPREF1181_RS06765 at 726.801 kb on + strand, within HMPREF1181_RS06765 at 726.802 kb on - strand, within HMPREF1181_RS06765 at 726.813 kb on + strand, within HMPREF1181_RS06765 at 726.853 kb on + strand, within HMPREF1181_RS06765 at 726.936 kb on + strand, within HMPREF1181_RS06765 at 727.021 kb on + strand, within HMPREF1181_RS06765 at 727.021 kb on + strand, within HMPREF1181_RS06765 at 727.024 kb on - strand, within HMPREF1181_RS06765 at 727.024 kb on - strand, within HMPREF1181_RS06765 at 727.065 kb on - strand, within HMPREF1181_RS06765 at 727.090 kb on + strand, within HMPREF1181_RS06765 at 727.091 kb on - strand, within HMPREF1181_RS06765 at 727.091 kb on - strand, within HMPREF1181_RS06765 at 727.099 kb on - strand, within HMPREF1181_RS06765 at 727.113 kb on - strand, within HMPREF1181_RS06765 at 727.139 kb on + strand, within HMPREF1181_RS06765 at 727.139 kb on + strand, within HMPREF1181_RS06765 at 727.139 kb on + strand, within HMPREF1181_RS06765 at 727.140 kb on - strand, within HMPREF1181_RS06765 at 727.167 kb on - strand, within HMPREF1181_RS06765 at 727.229 kb on + strand, within HMPREF1181_RS06765 at 727.234 kb on + strand, within HMPREF1181_RS06765 at 727.234 kb on + strand, within HMPREF1181_RS06765 at 727.235 kb on - strand, within HMPREF1181_RS06765 at 727.235 kb on - strand, within HMPREF1181_RS06765 at 727.235 kb on - strand, within HMPREF1181_RS06765 at 727.428 kb on + strand, within HMPREF1181_RS06765 at 727.428 kb on + strand, within HMPREF1181_RS06765 at 727.469 kb on - strand, within HMPREF1181_RS06765 at 727.485 kb on - strand, within HMPREF1181_RS06765 at 727.571 kb on - strand, within HMPREF1181_RS06765 at 727.621 kb on - strand, within HMPREF1181_RS06765 at 727.730 kb on - strand, within HMPREF1181_RS06765 at 727.731 kb on + strand, within HMPREF1181_RS06765 at 727.732 kb on - strand, within HMPREF1181_RS06765 at 727.732 kb on - strand, within HMPREF1181_RS06765 at 727.738 kb on + strand, within HMPREF1181_RS06765 at 728.114 kb on - strand, within HMPREF1181_RS06765 at 728.230 kb on + strand at 728.362 kb on + strand at 728.396 kb on + strand at 728.396 kb on + strand at 728.464 kb on - strand at 728.474 kb on + strand at 728.476 kb on + strand at 728.509 kb on + strand at 728.665 kb on - strand at 728.667 kb on - strand at 728.668 kb on + strand at 728.754 kb on + strand, within HMPREF1181_RS06770 at 728.755 kb on - strand, within HMPREF1181_RS06770 at 728.831 kb on + strand, within HMPREF1181_RS06770 at 728.832 kb on - strand, within HMPREF1181_RS06770 at 728.834 kb on - strand, within HMPREF1181_RS06770 at 728.906 kb on - strand, within HMPREF1181_RS06770 at 728.906 kb on - strand, within HMPREF1181_RS06770 at 729.002 kb on - strand, within HMPREF1181_RS06770 at 729.085 kb on + strand, within HMPREF1181_RS06770 at 729.086 kb on - strand, within HMPREF1181_RS06770 at 729.119 kb on - strand, within HMPREF1181_RS06770 at 729.174 kb on - strand, within HMPREF1181_RS06770 at 729.279 kb on - strand at 729.347 kb on + strand at 729.392 kb on - strand, within HMPREF1181_RS06775
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/ml (C) remove 725,197 + HMPREF1181_RS06760 0.17 +0.2 725,197 + HMPREF1181_RS06760 0.17 -1.2 725,336 + HMPREF1181_RS06760 0.29 -1.8 725,337 - HMPREF1181_RS06760 0.29 -1.8 725,449 + HMPREF1181_RS06760 0.39 -2.1 725,450 - HMPREF1181_RS06760 0.39 -1.2 725,450 - HMPREF1181_RS06760 0.39 -0.3 725,450 - HMPREF1181_RS06760 0.39 -1.1 725,744 + HMPREF1181_RS06760 0.64 -1.1 725,745 - HMPREF1181_RS06760 0.64 -0.3 725,837 + HMPREF1181_RS06760 0.72 -0.6 725,951 - HMPREF1181_RS06760 0.82 -1.1 725,993 - HMPREF1181_RS06760 0.85 -0.8 725,996 + HMPREF1181_RS06760 0.85 -3.6 725,996 + HMPREF1181_RS06760 0.85 -1.4 725,996 + HMPREF1181_RS06760 0.85 -2.9 725,997 - HMPREF1181_RS06760 0.85 -1.3 725,997 - HMPREF1181_RS06760 0.85 -1.2 725,998 + HMPREF1181_RS06760 0.86 -1.9 726,069 + -4.2 726,141 + -0.3 726,142 - -0.3 726,142 - -0.5 726,144 + -1.0 726,172 - -0.5 726,172 - -1.4 726,179 + +1.9 726,183 + -1.6 726,298 - -1.9 726,298 - -1.2 726,331 + -0.6 726,332 - -2.3 726,334 - -2.0 726,338 + +0.4 726,412 + +0.1 726,460 + HMPREF1181_RS06765 0.12 -3.0 726,500 + HMPREF1181_RS06765 0.14 -0.4 726,501 - HMPREF1181_RS06765 0.14 -0.9 726,609 + HMPREF1181_RS06765 0.19 -0.6 726,610 - HMPREF1181_RS06765 0.19 -0.2 726,610 - HMPREF1181_RS06765 0.19 -1.2 726,617 - HMPREF1181_RS06765 0.19 -2.0 726,666 - HMPREF1181_RS06765 0.21 -1.2 726,722 + HMPREF1181_RS06765 0.24 -2.7 726,776 - HMPREF1181_RS06765 0.26 -0.2 726,801 + HMPREF1181_RS06765 0.27 -1.7 726,802 - HMPREF1181_RS06765 0.27 -0.2 726,813 + HMPREF1181_RS06765 0.28 -1.6 726,853 + HMPREF1181_RS06765 0.29 +0.9 726,936 + HMPREF1181_RS06765 0.33 -0.7 727,021 + HMPREF1181_RS06765 0.37 -0.2 727,021 + HMPREF1181_RS06765 0.37 -1.2 727,024 - HMPREF1181_RS06765 0.37 -0.9 727,024 - HMPREF1181_RS06765 0.37 -0.0 727,065 - HMPREF1181_RS06765 0.39 -0.8 727,090 + HMPREF1181_RS06765 0.40 -0.6 727,091 - HMPREF1181_RS06765 0.40 -0.3 727,091 - HMPREF1181_RS06765 0.40 +0.4 727,099 - HMPREF1181_RS06765 0.40 -0.6 727,113 - HMPREF1181_RS06765 0.41 -0.6 727,139 + HMPREF1181_RS06765 0.42 -2.2 727,139 + HMPREF1181_RS06765 0.42 +1.2 727,139 + HMPREF1181_RS06765 0.42 -0.1 727,140 - HMPREF1181_RS06765 0.42 -0.3 727,167 - HMPREF1181_RS06765 0.43 +0.3 727,229 + HMPREF1181_RS06765 0.46 +1.4 727,234 + HMPREF1181_RS06765 0.46 -1.4 727,234 + HMPREF1181_RS06765 0.46 +0.1 727,235 - HMPREF1181_RS06765 0.46 -2.0 727,235 - HMPREF1181_RS06765 0.46 -1.5 727,235 - HMPREF1181_RS06765 0.46 -1.4 727,428 + HMPREF1181_RS06765 0.55 -1.4 727,428 + HMPREF1181_RS06765 0.55 -1.4 727,469 - HMPREF1181_RS06765 0.57 +0.5 727,485 - HMPREF1181_RS06765 0.58 -0.8 727,571 - HMPREF1181_RS06765 0.61 +0.0 727,621 - HMPREF1181_RS06765 0.64 +0.0 727,730 - HMPREF1181_RS06765 0.68 -0.6 727,731 + HMPREF1181_RS06765 0.69 -0.4 727,732 - HMPREF1181_RS06765 0.69 -3.6 727,732 - HMPREF1181_RS06765 0.69 -0.1 727,738 + HMPREF1181_RS06765 0.69 -1.9 728,114 - HMPREF1181_RS06765 0.86 -0.2 728,230 + -0.8 728,362 + -0.9 728,396 + -2.1 728,396 + -0.8 728,464 - -2.1 728,474 + +2.8 728,476 + -2.9 728,509 + -2.9 728,665 - -2.5 728,667 - -1.5 728,668 + -1.6 728,754 + HMPREF1181_RS06770 0.16 +0.5 728,755 - HMPREF1181_RS06770 0.16 -1.1 728,831 + HMPREF1181_RS06770 0.28 -1.4 728,832 - HMPREF1181_RS06770 0.29 -2.1 728,834 - HMPREF1181_RS06770 0.29 -1.7 728,906 - HMPREF1181_RS06770 0.41 -2.1 728,906 - HMPREF1181_RS06770 0.41 -1.9 729,002 - HMPREF1181_RS06770 0.56 -1.1 729,085 + HMPREF1181_RS06770 0.70 +0.2 729,086 - HMPREF1181_RS06770 0.70 -1.1 729,119 - HMPREF1181_RS06770 0.75 -1.5 729,174 - HMPREF1181_RS06770 0.84 -1.5 729,279 - +1.1 729,347 + -1.4 729,392 - HMPREF1181_RS06775 0.13 +2.3
Or see this region's nucleotide sequence