Experiment: Locust bean gum 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04775 and HMPREF1181_RS04780 are separated by 198 nucleotides HMPREF1181_RS04780 and HMPREF1181_RS04785 are separated by 296 nucleotides HMPREF1181_RS04785 and HMPREF1181_RS04790 are separated by 46 nucleotides
HMPREF1181_RS04775: HMPREF1181_RS04775 - A/G-specific adenine glycosylase, at 213,288 to 214,328
_RS04775
HMPREF1181_RS04780: HMPREF1181_RS04780 - integration host factor subunit beta, at 214,527 to 214,802
_RS04780
HMPREF1181_RS04785: HMPREF1181_RS04785 - Rne/Rng family ribonuclease, at 215,099 to 216,673
_RS04785
HMPREF1181_RS04790: HMPREF1181_RS04790 - iron-containing alcohol dehydrogenase, at 216,720 to 217,892
_RS04790
Position (kb) 215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 214.111 kb on + strand, within HMPREF1181_RS04775 at 214.193 kb on - strand, within HMPREF1181_RS04775 at 214.200 kb on + strand, within HMPREF1181_RS04775 at 214.332 kb on + strand at 214.332 kb on + strand at 214.332 kb on + strand at 214.800 kb on + strand at 215.006 kb on + strand at 216.698 kb on + strand at 216.759 kb on - strand at 216.773 kb on - strand at 216.825 kb on + strand at 216.826 kb on - strand at 216.989 kb on + strand, within HMPREF1181_RS04790 at 216.989 kb on + strand, within HMPREF1181_RS04790 at 216.990 kb on - strand, within HMPREF1181_RS04790 at 217.024 kb on - strand, within HMPREF1181_RS04790 at 217.049 kb on + strand, within HMPREF1181_RS04790 at 217.154 kb on + strand, within HMPREF1181_RS04790 at 217.154 kb on + strand, within HMPREF1181_RS04790 at 217.154 kb on + strand, within HMPREF1181_RS04790 at 217.217 kb on + strand, within HMPREF1181_RS04790 at 217.292 kb on + strand, within HMPREF1181_RS04790 at 217.408 kb on - strand, within HMPREF1181_RS04790 at 217.552 kb on + strand, within HMPREF1181_RS04790 at 217.558 kb on - strand, within HMPREF1181_RS04790 at 217.584 kb on - strand, within HMPREF1181_RS04790 at 217.584 kb on - strand, within HMPREF1181_RS04790 at 217.590 kb on + strand, within HMPREF1181_RS04790 at 217.591 kb on - strand, within HMPREF1181_RS04790 at 217.667 kb on + strand, within HMPREF1181_RS04790
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/ml (C) remove 214,111 + HMPREF1181_RS04775 0.79 +1.7 214,193 - HMPREF1181_RS04775 0.87 -2.4 214,200 + HMPREF1181_RS04775 0.88 -0.1 214,332 + +0.3 214,332 + +0.2 214,332 + -0.3 214,800 + -1.1 215,006 + +0.0 216,698 + -3.7 216,759 - -0.4 216,773 - +0.1 216,825 + +2.2 216,826 - -1.3 216,989 + HMPREF1181_RS04790 0.23 +0.5 216,989 + HMPREF1181_RS04790 0.23 -1.6 216,990 - HMPREF1181_RS04790 0.23 +1.3 217,024 - HMPREF1181_RS04790 0.26 -0.5 217,049 + HMPREF1181_RS04790 0.28 -1.9 217,154 + HMPREF1181_RS04790 0.37 +1.7 217,154 + HMPREF1181_RS04790 0.37 +0.1 217,154 + HMPREF1181_RS04790 0.37 +1.4 217,217 + HMPREF1181_RS04790 0.42 -2.7 217,292 + HMPREF1181_RS04790 0.49 -0.4 217,408 - HMPREF1181_RS04790 0.59 +0.5 217,552 + HMPREF1181_RS04790 0.71 +0.5 217,558 - HMPREF1181_RS04790 0.71 +0.5 217,584 - HMPREF1181_RS04790 0.74 +1.1 217,584 - HMPREF1181_RS04790 0.74 +2.2 217,590 + HMPREF1181_RS04790 0.74 +0.4 217,591 - HMPREF1181_RS04790 0.74 +1.9 217,667 + HMPREF1181_RS04790 0.81 -0.1
Or see this region's nucleotide sequence