Experiment: Chitin from shrimp shells 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS10515 and HMPREF1181_RS10520 are separated by 101 nucleotides HMPREF1181_RS10520 and HMPREF1181_RS10525 are separated by 134 nucleotides
HMPREF1181_RS10515: HMPREF1181_RS10515 - site-specific integrase, at 74,717 to 75,715
_RS10515
HMPREF1181_RS10520: HMPREF1181_RS10520 - TolC family protein, at 75,817 to 77,226
_RS10520
HMPREF1181_RS10525: HMPREF1181_RS10525 - efflux RND transporter periplasmic adaptor subunit, at 77,361 to 78,347
_RS10525
Position (kb) 75
76
77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 75.069 kb on + strand, within HMPREF1181_RS10515 at 75.169 kb on - strand, within HMPREF1181_RS10515 at 75.266 kb on + strand, within HMPREF1181_RS10515 at 75.368 kb on - strand, within HMPREF1181_RS10515 at 75.369 kb on + strand, within HMPREF1181_RS10515 at 75.369 kb on + strand, within HMPREF1181_RS10515 at 75.370 kb on - strand, within HMPREF1181_RS10515 at 75.598 kb on + strand, within HMPREF1181_RS10515 at 75.604 kb on + strand, within HMPREF1181_RS10515 at 75.610 kb on + strand, within HMPREF1181_RS10515 at 75.610 kb on + strand, within HMPREF1181_RS10515 at 75.610 kb on + strand, within HMPREF1181_RS10515 at 75.611 kb on - strand, within HMPREF1181_RS10515 at 75.615 kb on - strand, within HMPREF1181_RS10515 at 75.667 kb on - strand at 75.744 kb on + strand at 75.786 kb on - strand at 75.811 kb on + strand at 75.815 kb on - strand at 75.817 kb on - strand at 76.029 kb on - strand, within HMPREF1181_RS10520 at 76.200 kb on - strand, within HMPREF1181_RS10520 at 76.259 kb on + strand, within HMPREF1181_RS10520 at 76.411 kb on + strand, within HMPREF1181_RS10520 at 76.411 kb on + strand, within HMPREF1181_RS10520 at 76.448 kb on + strand, within HMPREF1181_RS10520 at 76.449 kb on - strand, within HMPREF1181_RS10520 at 76.552 kb on - strand, within HMPREF1181_RS10520 at 76.584 kb on - strand, within HMPREF1181_RS10520 at 76.663 kb on + strand, within HMPREF1181_RS10520 at 76.664 kb on - strand, within HMPREF1181_RS10520 at 76.664 kb on - strand, within HMPREF1181_RS10520 at 76.664 kb on - strand, within HMPREF1181_RS10520 at 76.695 kb on + strand, within HMPREF1181_RS10520 at 76.697 kb on + strand, within HMPREF1181_RS10520 at 76.698 kb on - strand, within HMPREF1181_RS10520 at 76.769 kb on + strand, within HMPREF1181_RS10520 at 76.769 kb on + strand, within HMPREF1181_RS10520 at 76.954 kb on + strand, within HMPREF1181_RS10520 at 76.954 kb on + strand, within HMPREF1181_RS10520 at 76.980 kb on + strand, within HMPREF1181_RS10520 at 77.025 kb on - strand, within HMPREF1181_RS10520 at 77.078 kb on + strand, within HMPREF1181_RS10520 at 77.079 kb on - strand, within HMPREF1181_RS10520 at 77.132 kb on - strand at 77.132 kb on - strand at 77.132 kb on - strand at 77.135 kb on - strand at 77.141 kb on - strand at 77.258 kb on - strand at 77.288 kb on + strand at 77.289 kb on - strand at 77.301 kb on + strand at 77.336 kb on - strand at 77.342 kb on + strand at 77.343 kb on - strand at 77.347 kb on + strand at 77.353 kb on + strand at 77.366 kb on + strand at 77.408 kb on - strand at 77.418 kb on + strand at 77.497 kb on + strand, within HMPREF1181_RS10525 at 77.498 kb on - strand, within HMPREF1181_RS10525 at 77.543 kb on - strand, within HMPREF1181_RS10525 at 77.623 kb on + strand, within HMPREF1181_RS10525 at 77.623 kb on + strand, within HMPREF1181_RS10525 at 77.777 kb on + strand, within HMPREF1181_RS10525 at 77.777 kb on + strand, within HMPREF1181_RS10525 at 77.777 kb on + strand, within HMPREF1181_RS10525 at 77.778 kb on - strand, within HMPREF1181_RS10525 at 77.815 kb on + strand, within HMPREF1181_RS10525 at 77.826 kb on + strand, within HMPREF1181_RS10525 at 77.827 kb on - strand, within HMPREF1181_RS10525 at 77.859 kb on + strand, within HMPREF1181_RS10525 at 77.860 kb on - strand, within HMPREF1181_RS10525 at 77.860 kb on - strand, within HMPREF1181_RS10525 at 77.926 kb on + strand, within HMPREF1181_RS10525 at 78.092 kb on - strand, within HMPREF1181_RS10525 at 78.181 kb on + strand, within HMPREF1181_RS10525 at 78.195 kb on + strand, within HMPREF1181_RS10525
Per-strain Table
Position Strand Gene LocusTag Fraction Chitin from shrimp shells 2.5 mg/ml (C) remove 75,069 + HMPREF1181_RS10515 0.35 +1.6 75,169 - HMPREF1181_RS10515 0.45 +0.8 75,266 + HMPREF1181_RS10515 0.55 -0.4 75,368 - HMPREF1181_RS10515 0.65 -1.7 75,369 + HMPREF1181_RS10515 0.65 +1.9 75,369 + HMPREF1181_RS10515 0.65 -2.4 75,370 - HMPREF1181_RS10515 0.65 -1.2 75,598 + HMPREF1181_RS10515 0.88 +1.2 75,604 + HMPREF1181_RS10515 0.89 -2.1 75,610 + HMPREF1181_RS10515 0.89 +0.0 75,610 + HMPREF1181_RS10515 0.89 -2.1 75,610 + HMPREF1181_RS10515 0.89 -2.6 75,611 - HMPREF1181_RS10515 0.89 +0.7 75,615 - HMPREF1181_RS10515 0.90 +3.0 75,667 - -3.3 75,744 + -1.0 75,786 - -2.8 75,811 + +2.5 75,815 - +1.0 75,817 - -2.9 76,029 - HMPREF1181_RS10520 0.15 -2.4 76,200 - HMPREF1181_RS10520 0.27 -0.9 76,259 + HMPREF1181_RS10520 0.31 -4.5 76,411 + HMPREF1181_RS10520 0.42 -1.4 76,411 + HMPREF1181_RS10520 0.42 -0.6 76,448 + HMPREF1181_RS10520 0.45 +1.0 76,449 - HMPREF1181_RS10520 0.45 +1.3 76,552 - HMPREF1181_RS10520 0.52 +1.2 76,584 - HMPREF1181_RS10520 0.54 -0.6 76,663 + HMPREF1181_RS10520 0.60 +0.2 76,664 - HMPREF1181_RS10520 0.60 -0.0 76,664 - HMPREF1181_RS10520 0.60 +1.2 76,664 - HMPREF1181_RS10520 0.60 -3.9 76,695 + HMPREF1181_RS10520 0.62 +0.8 76,697 + HMPREF1181_RS10520 0.62 +1.3 76,698 - HMPREF1181_RS10520 0.62 +0.8 76,769 + HMPREF1181_RS10520 0.68 -2.1 76,769 + HMPREF1181_RS10520 0.68 -0.5 76,954 + HMPREF1181_RS10520 0.81 +0.5 76,954 + HMPREF1181_RS10520 0.81 -2.4 76,980 + HMPREF1181_RS10520 0.82 +0.3 77,025 - HMPREF1181_RS10520 0.86 -2.0 77,078 + HMPREF1181_RS10520 0.89 +0.2 77,079 - HMPREF1181_RS10520 0.90 -0.8 77,132 - -2.0 77,132 - +0.0 77,132 - +0.5 77,135 - +0.1 77,141 - +0.1 77,258 - +0.1 77,288 + -0.2 77,289 - -0.1 77,301 + -0.0 77,336 - -1.0 77,342 + -1.6 77,343 - +2.2 77,347 + -1.2 77,353 + -0.9 77,366 + +1.1 77,408 - -0.4 77,418 + -0.9 77,497 + HMPREF1181_RS10525 0.14 -0.2 77,498 - HMPREF1181_RS10525 0.14 -0.5 77,543 - HMPREF1181_RS10525 0.18 +1.4 77,623 + HMPREF1181_RS10525 0.27 -0.8 77,623 + HMPREF1181_RS10525 0.27 +0.0 77,777 + HMPREF1181_RS10525 0.42 -1.0 77,777 + HMPREF1181_RS10525 0.42 +1.3 77,777 + HMPREF1181_RS10525 0.42 +0.5 77,778 - HMPREF1181_RS10525 0.42 -1.7 77,815 + HMPREF1181_RS10525 0.46 -2.4 77,826 + HMPREF1181_RS10525 0.47 -1.5 77,827 - HMPREF1181_RS10525 0.47 +1.1 77,859 + HMPREF1181_RS10525 0.50 -2.0 77,860 - HMPREF1181_RS10525 0.51 +0.2 77,860 - HMPREF1181_RS10525 0.51 -0.1 77,926 + HMPREF1181_RS10525 0.57 -3.4 78,092 - HMPREF1181_RS10525 0.74 -0.6 78,181 + HMPREF1181_RS10525 0.83 -0.6 78,195 + HMPREF1181_RS10525 0.84 +1.2
Or see this region's nucleotide sequence