Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS00115

Experiment: Chitin from shrimp shells 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS00110 and HMPREF1181_RS00115 are separated by 298 nucleotidesHMPREF1181_RS00115 and HMPREF1181_RS00120 are separated by 100 nucleotides HMPREF1181_RS00110: HMPREF1181_RS00110 - KilA-N domain-containing protein, at 26,344 to 27,162 _RS00110 HMPREF1181_RS00115: HMPREF1181_RS00115 - fimbrillin family protein, at 27,461 to 29,374 _RS00115 HMPREF1181_RS00120: HMPREF1181_RS00120 - methylenetetrahydrofolate reductase [NAD(P)H], at 29,475 to 30,428 _RS00120 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 26.526 kb on + strand, within HMPREF1181_RS00110at 26.595 kb on - strand, within HMPREF1181_RS00110at 26.622 kb on + strand, within HMPREF1181_RS00110at 26.668 kb on + strand, within HMPREF1181_RS00110at 26.714 kb on + strand, within HMPREF1181_RS00110at 26.728 kb on + strand, within HMPREF1181_RS00110at 26.823 kb on - strand, within HMPREF1181_RS00110at 26.851 kb on - strand, within HMPREF1181_RS00110at 26.874 kb on - strand, within HMPREF1181_RS00110at 26.997 kb on + strand, within HMPREF1181_RS00110at 26.998 kb on - strand, within HMPREF1181_RS00110at 27.000 kb on + strand, within HMPREF1181_RS00110at 27.045 kb on - strand, within HMPREF1181_RS00110at 27.048 kb on + strand, within HMPREF1181_RS00110at 27.117 kb on + strandat 27.117 kb on + strandat 27.118 kb on - strandat 27.118 kb on - strandat 27.147 kb on + strandat 27.148 kb on - strandat 27.188 kb on - strandat 27.221 kb on + strandat 27.251 kb on + strandat 27.257 kb on + strandat 27.275 kb on + strandat 27.280 kb on - strandat 27.281 kb on + strandat 27.310 kb on - strandat 27.411 kb on - strandat 27.447 kb on - strandat 27.452 kb on + strandat 27.457 kb on + strandat 27.466 kb on + strandat 27.466 kb on + strandat 27.467 kb on - strandat 27.498 kb on - strandat 27.530 kb on - strandat 27.549 kb on + strandat 27.550 kb on - strandat 27.574 kb on + strandat 27.604 kb on + strandat 27.621 kb on + strandat 27.625 kb on + strandat 27.643 kb on - strandat 27.727 kb on + strand, within HMPREF1181_RS00115at 27.764 kb on + strand, within HMPREF1181_RS00115at 27.764 kb on + strand, within HMPREF1181_RS00115at 27.764 kb on + strand, within HMPREF1181_RS00115at 27.765 kb on - strand, within HMPREF1181_RS00115at 27.765 kb on - strand, within HMPREF1181_RS00115at 27.861 kb on + strand, within HMPREF1181_RS00115at 27.890 kb on + strand, within HMPREF1181_RS00115at 27.931 kb on - strand, within HMPREF1181_RS00115at 27.997 kb on + strand, within HMPREF1181_RS00115at 27.997 kb on + strand, within HMPREF1181_RS00115at 27.998 kb on - strand, within HMPREF1181_RS00115at 27.998 kb on - strand, within HMPREF1181_RS00115at 28.053 kb on + strand, within HMPREF1181_RS00115at 28.054 kb on - strand, within HMPREF1181_RS00115at 28.054 kb on - strand, within HMPREF1181_RS00115at 28.080 kb on + strand, within HMPREF1181_RS00115at 28.080 kb on + strand, within HMPREF1181_RS00115at 28.083 kb on - strand, within HMPREF1181_RS00115at 28.171 kb on + strand, within HMPREF1181_RS00115at 28.193 kb on - strand, within HMPREF1181_RS00115at 28.193 kb on - strand, within HMPREF1181_RS00115at 28.462 kb on + strand, within HMPREF1181_RS00115at 28.463 kb on - strand, within HMPREF1181_RS00115at 28.466 kb on + strand, within HMPREF1181_RS00115at 28.474 kb on - strand, within HMPREF1181_RS00115at 28.474 kb on - strand, within HMPREF1181_RS00115at 28.474 kb on - strand, within HMPREF1181_RS00115at 28.475 kb on + strand, within HMPREF1181_RS00115at 28.475 kb on + strand, within HMPREF1181_RS00115at 28.475 kb on + strand, within HMPREF1181_RS00115at 28.476 kb on - strand, within HMPREF1181_RS00115at 28.515 kb on - strand, within HMPREF1181_RS00115at 28.520 kb on + strand, within HMPREF1181_RS00115at 28.550 kb on - strand, within HMPREF1181_RS00115at 28.560 kb on + strand, within HMPREF1181_RS00115at 28.615 kb on - strand, within HMPREF1181_RS00115at 28.688 kb on + strand, within HMPREF1181_RS00115at 28.689 kb on - strand, within HMPREF1181_RS00115at 28.797 kb on - strand, within HMPREF1181_RS00115at 28.810 kb on + strand, within HMPREF1181_RS00115at 28.813 kb on - strand, within HMPREF1181_RS00115at 28.822 kb on + strand, within HMPREF1181_RS00115at 28.823 kb on - strand, within HMPREF1181_RS00115at 28.823 kb on - strand, within HMPREF1181_RS00115at 28.851 kb on + strand, within HMPREF1181_RS00115at 28.897 kb on + strand, within HMPREF1181_RS00115at 28.897 kb on + strand, within HMPREF1181_RS00115at 28.897 kb on + strand, within HMPREF1181_RS00115at 28.898 kb on - strand, within HMPREF1181_RS00115at 29.069 kb on + strand, within HMPREF1181_RS00115at 29.069 kb on + strand, within HMPREF1181_RS00115at 29.073 kb on + strand, within HMPREF1181_RS00115at 29.108 kb on - strand, within HMPREF1181_RS00115at 29.235 kb on + strandat 29.238 kb on - strandat 29.339 kb on + strandat 29.340 kb on - strandat 29.340 kb on - strandat 29.342 kb on - strandat 29.615 kb on + strand, within HMPREF1181_RS00120at 29.793 kb on + strand, within HMPREF1181_RS00120at 29.793 kb on + strand, within HMPREF1181_RS00120at 29.793 kb on + strand, within HMPREF1181_RS00120at 30.054 kb on + strand, within HMPREF1181_RS00120at 30.126 kb on + strand, within HMPREF1181_RS00120at 30.126 kb on + strand, within HMPREF1181_RS00120at 30.241 kb on + strand, within HMPREF1181_RS00120

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Per-strain Table

Position Strand Gene LocusTag Fraction Chitin from shrimp shells 2.5 mg/ml (C)
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26,526 + HMPREF1181_RS00110 0.22 +0.6
26,595 - HMPREF1181_RS00110 0.31 +0.8
26,622 + HMPREF1181_RS00110 0.34 +0.3
26,668 + HMPREF1181_RS00110 0.40 -0.4
26,714 + HMPREF1181_RS00110 0.45 -2.2
26,728 + HMPREF1181_RS00110 0.47 +0.8
26,823 - HMPREF1181_RS00110 0.58 +2.9
26,851 - HMPREF1181_RS00110 0.62 -2.0
26,874 - HMPREF1181_RS00110 0.65 +1.5
26,997 + HMPREF1181_RS00110 0.80 +1.8
26,998 - HMPREF1181_RS00110 0.80 -0.6
27,000 + HMPREF1181_RS00110 0.80 +2.1
27,045 - HMPREF1181_RS00110 0.86 -0.9
27,048 + HMPREF1181_RS00110 0.86 +2.2
27,117 + +0.1
27,117 + +1.2
27,118 - +0.4
27,118 - -0.7
27,147 + +0.3
27,148 - -0.8
27,188 - -0.3
27,221 + -2.6
27,251 + +2.3
27,257 + +0.4
27,275 + -3.4
27,280 - -2.9
27,281 + -1.2
27,310 - +0.8
27,411 - -0.3
27,447 - -2.0
27,452 + -4.7
27,457 + -2.0
27,466 + -1.8
27,466 + -2.1
27,467 - +0.6
27,498 - -0.0
27,530 - -0.4
27,549 + -0.7
27,550 - +1.4
27,574 + +2.5
27,604 + +1.0
27,621 + -0.8
27,625 + +2.2
27,643 - +1.9
27,727 + HMPREF1181_RS00115 0.14 -1.9
27,764 + HMPREF1181_RS00115 0.16 -0.7
27,764 + HMPREF1181_RS00115 0.16 -2.4
27,764 + HMPREF1181_RS00115 0.16 +1.1
27,765 - HMPREF1181_RS00115 0.16 +0.9
27,765 - HMPREF1181_RS00115 0.16 -5.5
27,861 + HMPREF1181_RS00115 0.21 -1.0
27,890 + HMPREF1181_RS00115 0.22 +1.7
27,931 - HMPREF1181_RS00115 0.25 -1.2
27,997 + HMPREF1181_RS00115 0.28 -2.6
27,997 + HMPREF1181_RS00115 0.28 -2.5
27,998 - HMPREF1181_RS00115 0.28 -0.1
27,998 - HMPREF1181_RS00115 0.28 -2.5
28,053 + HMPREF1181_RS00115 0.31 -2.5
28,054 - HMPREF1181_RS00115 0.31 +1.8
28,054 - HMPREF1181_RS00115 0.31 -0.4
28,080 + HMPREF1181_RS00115 0.32 -2.7
28,080 + HMPREF1181_RS00115 0.32 -0.9
28,083 - HMPREF1181_RS00115 0.32 -1.4
28,171 + HMPREF1181_RS00115 0.37 -4.3
28,193 - HMPREF1181_RS00115 0.38 +0.1
28,193 - HMPREF1181_RS00115 0.38 +2.0
28,462 + HMPREF1181_RS00115 0.52 +0.5
28,463 - HMPREF1181_RS00115 0.52 +1.8
28,466 + HMPREF1181_RS00115 0.53 -0.8
28,474 - HMPREF1181_RS00115 0.53 -0.1
28,474 - HMPREF1181_RS00115 0.53 +2.7
28,474 - HMPREF1181_RS00115 0.53 +0.3
28,475 + HMPREF1181_RS00115 0.53 -0.4
28,475 + HMPREF1181_RS00115 0.53 -1.0
28,475 + HMPREF1181_RS00115 0.53 -0.8
28,476 - HMPREF1181_RS00115 0.53 -1.2
28,515 - HMPREF1181_RS00115 0.55 -2.5
28,520 + HMPREF1181_RS00115 0.55 -1.0
28,550 - HMPREF1181_RS00115 0.57 -0.8
28,560 + HMPREF1181_RS00115 0.57 +0.2
28,615 - HMPREF1181_RS00115 0.60 +1.3
28,688 + HMPREF1181_RS00115 0.64 -2.1
28,689 - HMPREF1181_RS00115 0.64 +0.4
28,797 - HMPREF1181_RS00115 0.70 -2.2
28,810 + HMPREF1181_RS00115 0.70 -1.5
28,813 - HMPREF1181_RS00115 0.71 -1.0
28,822 + HMPREF1181_RS00115 0.71 -0.1
28,823 - HMPREF1181_RS00115 0.71 -1.4
28,823 - HMPREF1181_RS00115 0.71 +0.5
28,851 + HMPREF1181_RS00115 0.73 -2.2
28,897 + HMPREF1181_RS00115 0.75 -1.0
28,897 + HMPREF1181_RS00115 0.75 -4.2
28,897 + HMPREF1181_RS00115 0.75 -1.9
28,898 - HMPREF1181_RS00115 0.75 +0.2
29,069 + HMPREF1181_RS00115 0.84 -0.0
29,069 + HMPREF1181_RS00115 0.84 -4.3
29,073 + HMPREF1181_RS00115 0.84 +1.3
29,108 - HMPREF1181_RS00115 0.86 +1.1
29,235 + -0.1
29,238 - -3.5
29,339 + -1.8
29,340 - -3.7
29,340 - -1.9
29,342 - -2.1
29,615 + HMPREF1181_RS00120 0.15 -2.2
29,793 + HMPREF1181_RS00120 0.33 +0.4
29,793 + HMPREF1181_RS00120 0.33 -1.4
29,793 + HMPREF1181_RS00120 0.33 -2.1
30,054 + HMPREF1181_RS00120 0.61 -0.5
30,126 + HMPREF1181_RS00120 0.68 -1.7
30,126 + HMPREF1181_RS00120 0.68 -1.7
30,241 + HMPREF1181_RS00120 0.80 -0.4

Or see this region's nucleotide sequence