Experiment: polygalacturonic 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS15530 and HMPREF1181_RS15535 are separated by 209 nucleotides HMPREF1181_RS15535 and HMPREF1181_RS15540 are separated by 20 nucleotides
HMPREF1181_RS15530: HMPREF1181_RS15530 - pyridoxal phosphate-dependent aminotransferase, at 54,621 to 55,820
_RS15530
HMPREF1181_RS15535: HMPREF1181_RS15535 - hypothetical protein, at 56,030 to 57,265
_RS15535
HMPREF1181_RS15540: HMPREF1181_RS15540 - hypothetical protein, at 57,286 to 59,889
_RS15540
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 55.057 kb on - strand, within HMPREF1181_RS15530 at 55.138 kb on - strand, within HMPREF1181_RS15530 at 55.138 kb on - strand, within HMPREF1181_RS15530 at 55.178 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.193 kb on - strand, within HMPREF1181_RS15530 at 55.407 kb on - strand, within HMPREF1181_RS15530 at 55.445 kb on - strand, within HMPREF1181_RS15530 at 55.445 kb on - strand, within HMPREF1181_RS15530 at 55.454 kb on - strand, within HMPREF1181_RS15530 at 55.546 kb on - strand, within HMPREF1181_RS15530 at 55.546 kb on - strand, within HMPREF1181_RS15530 at 55.578 kb on - strand, within HMPREF1181_RS15530 at 55.583 kb on - strand, within HMPREF1181_RS15530 at 55.723 kb on - strand at 55.912 kb on + strand at 56.024 kb on - strand at 56.065 kb on - strand at 56.068 kb on + strand at 56.101 kb on - strand at 56.123 kb on + strand at 56.155 kb on + strand, within HMPREF1181_RS15535 at 56.155 kb on + strand, within HMPREF1181_RS15535 at 56.156 kb on - strand, within HMPREF1181_RS15535 at 56.445 kb on + strand, within HMPREF1181_RS15535 at 56.446 kb on - strand, within HMPREF1181_RS15535 at 56.486 kb on + strand, within HMPREF1181_RS15535 at 56.519 kb on + strand, within HMPREF1181_RS15535 at 56.520 kb on - strand, within HMPREF1181_RS15535 at 56.645 kb on - strand, within HMPREF1181_RS15535 at 56.650 kb on - strand, within HMPREF1181_RS15535 at 56.737 kb on - strand, within HMPREF1181_RS15535 at 56.737 kb on - strand, within HMPREF1181_RS15535 at 56.917 kb on - strand, within HMPREF1181_RS15535 at 57.010 kb on - strand, within HMPREF1181_RS15535 at 57.069 kb on - strand, within HMPREF1181_RS15535 at 57.105 kb on - strand, within HMPREF1181_RS15535 at 57.105 kb on - strand, within HMPREF1181_RS15535 at 57.113 kb on - strand, within HMPREF1181_RS15535 at 57.130 kb on - strand, within HMPREF1181_RS15535 at 57.263 kb on + strand at 57.293 kb on - strand at 57.365 kb on - strand at 57.434 kb on + strand at 57.528 kb on + strand at 57.618 kb on + strand, within HMPREF1181_RS15540 at 57.626 kb on + strand, within HMPREF1181_RS15540 at 57.626 kb on + strand, within HMPREF1181_RS15540 at 57.658 kb on + strand, within HMPREF1181_RS15540 at 57.658 kb on + strand, within HMPREF1181_RS15540 at 57.658 kb on + strand, within HMPREF1181_RS15540 at 57.659 kb on - strand, within HMPREF1181_RS15540 at 57.698 kb on + strand, within HMPREF1181_RS15540 at 57.715 kb on - strand, within HMPREF1181_RS15540 at 57.819 kb on + strand, within HMPREF1181_RS15540 at 57.819 kb on + strand, within HMPREF1181_RS15540 at 57.826 kb on - strand, within HMPREF1181_RS15540 at 57.845 kb on - strand, within HMPREF1181_RS15540 at 57.915 kb on + strand, within HMPREF1181_RS15540 at 57.916 kb on - strand, within HMPREF1181_RS15540 at 57.916 kb on - strand, within HMPREF1181_RS15540 at 57.919 kb on + strand, within HMPREF1181_RS15540 at 57.920 kb on - strand, within HMPREF1181_RS15540 at 58.015 kb on - strand, within HMPREF1181_RS15540 at 58.015 kb on - strand, within HMPREF1181_RS15540 at 58.027 kb on - strand, within HMPREF1181_RS15540 at 58.036 kb on + strand, within HMPREF1181_RS15540 at 58.036 kb on + strand, within HMPREF1181_RS15540 at 58.057 kb on + strand, within HMPREF1181_RS15540 at 58.058 kb on - strand, within HMPREF1181_RS15540 at 58.058 kb on - strand, within HMPREF1181_RS15540 at 58.058 kb on - strand, within HMPREF1181_RS15540 at 58.109 kb on + strand, within HMPREF1181_RS15540 at 58.174 kb on - strand, within HMPREF1181_RS15540 at 58.248 kb on - strand, within HMPREF1181_RS15540 at 58.255 kb on - strand, within HMPREF1181_RS15540
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/ml (C) remove 55,057 - HMPREF1181_RS15530 0.36 -3.1 55,138 - HMPREF1181_RS15530 0.43 -3.5 55,138 - HMPREF1181_RS15530 0.43 -3.4 55,178 - HMPREF1181_RS15530 0.46 -2.6 55,193 - HMPREF1181_RS15530 0.48 -2.3 55,193 - HMPREF1181_RS15530 0.48 -4.4 55,193 - HMPREF1181_RS15530 0.48 -1.6 55,193 - HMPREF1181_RS15530 0.48 -1.4 55,407 - HMPREF1181_RS15530 0.66 -4.5 55,445 - HMPREF1181_RS15530 0.69 -2.2 55,445 - HMPREF1181_RS15530 0.69 -3.3 55,454 - HMPREF1181_RS15530 0.69 -4.3 55,546 - HMPREF1181_RS15530 0.77 -1.1 55,546 - HMPREF1181_RS15530 0.77 -3.2 55,578 - HMPREF1181_RS15530 0.80 -4.2 55,583 - HMPREF1181_RS15530 0.80 -4.6 55,723 - -3.4 55,912 + -0.7 56,024 - -0.5 56,065 - +1.9 56,068 + -1.5 56,101 - -0.8 56,123 + +0.4 56,155 + HMPREF1181_RS15535 0.10 +0.1 56,155 + HMPREF1181_RS15535 0.10 +0.2 56,156 - HMPREF1181_RS15535 0.10 +0.9 56,445 + HMPREF1181_RS15535 0.34 +0.7 56,446 - HMPREF1181_RS15535 0.34 -0.9 56,486 + HMPREF1181_RS15535 0.37 +0.8 56,519 + HMPREF1181_RS15535 0.40 +0.9 56,520 - HMPREF1181_RS15535 0.40 +0.0 56,645 - HMPREF1181_RS15535 0.50 -0.6 56,650 - HMPREF1181_RS15535 0.50 +0.4 56,737 - HMPREF1181_RS15535 0.57 +3.1 56,737 - HMPREF1181_RS15535 0.57 -0.1 56,917 - HMPREF1181_RS15535 0.72 +0.4 57,010 - HMPREF1181_RS15535 0.79 +0.6 57,069 - HMPREF1181_RS15535 0.84 -0.1 57,105 - HMPREF1181_RS15535 0.87 -0.1 57,105 - HMPREF1181_RS15535 0.87 +0.1 57,113 - HMPREF1181_RS15535 0.88 +0.6 57,130 - HMPREF1181_RS15535 0.89 -0.0 57,263 + -0.2 57,293 - +0.4 57,365 - -0.3 57,434 + +0.4 57,528 + -1.0 57,618 + HMPREF1181_RS15540 0.13 -0.1 57,626 + HMPREF1181_RS15540 0.13 +0.7 57,626 + HMPREF1181_RS15540 0.13 -1.1 57,658 + HMPREF1181_RS15540 0.14 +0.3 57,658 + HMPREF1181_RS15540 0.14 -0.7 57,658 + HMPREF1181_RS15540 0.14 -0.0 57,659 - HMPREF1181_RS15540 0.14 +0.1 57,698 + HMPREF1181_RS15540 0.16 -0.3 57,715 - HMPREF1181_RS15540 0.16 -2.2 57,819 + HMPREF1181_RS15540 0.20 -1.1 57,819 + HMPREF1181_RS15540 0.20 -0.6 57,826 - HMPREF1181_RS15540 0.21 +1.1 57,845 - HMPREF1181_RS15540 0.21 -0.7 57,915 + HMPREF1181_RS15540 0.24 -0.1 57,916 - HMPREF1181_RS15540 0.24 -0.4 57,916 - HMPREF1181_RS15540 0.24 -1.3 57,919 + HMPREF1181_RS15540 0.24 -0.0 57,920 - HMPREF1181_RS15540 0.24 -0.2 58,015 - HMPREF1181_RS15540 0.28 +0.1 58,015 - HMPREF1181_RS15540 0.28 -0.8 58,027 - HMPREF1181_RS15540 0.28 +0.5 58,036 + HMPREF1181_RS15540 0.29 -0.1 58,036 + HMPREF1181_RS15540 0.29 -0.4 58,057 + HMPREF1181_RS15540 0.30 +0.8 58,058 - HMPREF1181_RS15540 0.30 -0.4 58,058 - HMPREF1181_RS15540 0.30 +0.9 58,058 - HMPREF1181_RS15540 0.30 +0.3 58,109 + HMPREF1181_RS15540 0.32 +0.4 58,174 - HMPREF1181_RS15540 0.34 +0.9 58,248 - HMPREF1181_RS15540 0.37 -0.4 58,255 - HMPREF1181_RS15540 0.37 -0.1
Or see this region's nucleotide sequence