Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpV and HEPCGN_26745 are separated by 68 nucleotides HEPCGN_26745 and HEPCGN_26750 overlap by 8 nucleotides HEPCGN_26750 and lysB are separated by 95 nucleotides lysB and HEPCGN_26760 overlap by 4 nucleotides HEPCGN_26760 and rrrD are separated by 1 nucleotides
HEPCGN_26740: gpV - phage baseplate assembly protein V, at 4,101,403 to 4,101,981
gpV
HEPCGN_26745: HEPCGN_26745 - phage virion morphogenesis protein, at 4,102,050 to 4,102,496
_26745
HEPCGN_26750: HEPCGN_26750 - phage tail protein, at 4,102,489 to 4,102,920
_26750
HEPCGN_26755: lysB - Rz-like lysis system protein LysB, at 4,103,016 to 4,103,444
lysB
HEPCGN_26760: HEPCGN_26760 - Putative membrane protein, at 4,103,441 to 4,103,818
_26760
HEPCGN_26765: rrrD - glycoside hydrolase, at 4,103,820 to 4,104,332
rrrD
Position (kb) 4102
4103 Strain fitness (log2 ratio) -1
0
1 at 4101.732 kb on - strand, within gpV at 4101.819 kb on + strand, within gpV at 4101.819 kb on + strand, within gpV at 4101.820 kb on - strand, within gpV at 4101.923 kb on - strand, within gpV at 4101.968 kb on - strand at 4102.031 kb on - strand at 4102.151 kb on + strand, within HEPCGN_26745 at 4102.373 kb on + strand, within HEPCGN_26745 at 4102.539 kb on + strand, within HEPCGN_26750 at 4102.871 kb on + strand, within HEPCGN_26750 at 4102.884 kb on + strand at 4102.942 kb on + strand at 4103.292 kb on - strand, within lysB at 4103.506 kb on - strand, within HEPCGN_26760 at 4103.518 kb on + strand, within HEPCGN_26760 at 4103.546 kb on + strand, within HEPCGN_26760 at 4103.546 kb on + strand, within HEPCGN_26760 at 4103.547 kb on - strand, within HEPCGN_26760 at 4103.547 kb on - strand, within HEPCGN_26760 at 4103.547 kb on - strand, within HEPCGN_26760 at 4103.582 kb on + strand, within HEPCGN_26760 at 4103.583 kb on - strand, within HEPCGN_26760 at 4103.781 kb on - strand at 4103.781 kb on - strand at 4103.805 kb on - strand at 4103.805 kb on - strand at 4103.836 kb on - strand at 4103.900 kb on - strand, within rrrD
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 4,101,732 - gpV HEPCGN_26740 0.57 -0.1 4,101,819 + gpV HEPCGN_26740 0.72 +1.3 4,101,819 + gpV HEPCGN_26740 0.72 -0.1 4,101,820 - gpV HEPCGN_26740 0.72 -0.5 4,101,923 - gpV HEPCGN_26740 0.90 -0.5 4,101,968 - -0.0 4,102,031 - -0.0 4,102,151 + HEPCGN_26745 0.23 -0.3 4,102,373 + HEPCGN_26745 0.72 -0.3 4,102,539 + HEPCGN_26750 0.12 +0.6 4,102,871 + HEPCGN_26750 0.88 +1.1 4,102,884 + -0.1 4,102,942 + +0.1 4,103,292 - lysB HEPCGN_26755 0.64 +0.3 4,103,506 - HEPCGN_26760 0.17 +0.4 4,103,518 + HEPCGN_26760 0.20 +1.3 4,103,546 + HEPCGN_26760 0.28 -0.7 4,103,546 + HEPCGN_26760 0.28 +0.5 4,103,547 - HEPCGN_26760 0.28 +0.3 4,103,547 - HEPCGN_26760 0.28 +0.7 4,103,547 - HEPCGN_26760 0.28 -0.3 4,103,582 + HEPCGN_26760 0.37 +1.7 4,103,583 - HEPCGN_26760 0.38 -0.8 4,103,781 - +0.3 4,103,781 - -0.1 4,103,805 - +1.3 4,103,805 - +0.1 4,103,836 - +0.3 4,103,900 - rrrD HEPCGN_26765 0.16 +0.9
Or see this region's nucleotide sequence