Strain Fitness in Escherichia coli ECOR38 around HEPCGN_22820

Experiment: RB68

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB68
3,340,010	+	preA	HEPCGN_22815	0.19	+1.5
3,340,011	-	preA	HEPCGN_22815	0.19	+0.7
3,340,012	+	preA	HEPCGN_22815	0.19	+0.0
3,340,012	+	preA	HEPCGN_22815	0.19	-0.7
3,340,012	+	preA	HEPCGN_22815	0.19	+0.3
3,340,013	-	preA	HEPCGN_22815	0.19	+1.7
3,340,044	-	preA	HEPCGN_22815	0.22	+2.5
3,340,044	-	preA	HEPCGN_22815	0.22	-0.1
3,340,050	-	preA	HEPCGN_22815	0.22	+0.7
3,340,050	-	preA	HEPCGN_22815	0.22	+0.7
3,340,062	+	preA	HEPCGN_22815	0.23	+0.2
3,340,063	-	preA	HEPCGN_22815	0.23	+0.2
3,340,103	-	preA	HEPCGN_22815	0.27	-0.6
3,340,154	+	preA	HEPCGN_22815	0.31	+0.4
3,340,173	+	preA	HEPCGN_22815	0.32	+0.5
3,340,376	+	preA	HEPCGN_22815	0.49	+0.6
3,340,400	+	preA	HEPCGN_22815	0.51	+1.6
3,340,466	+	preA	HEPCGN_22815	0.56	+1.1
3,340,466	+	preA	HEPCGN_22815	0.56	+0.4
3,340,466	+	preA	HEPCGN_22815	0.56	-0.6
3,340,466	+	preA	HEPCGN_22815	0.56	+2.2
3,340,467	-	preA	HEPCGN_22815	0.56	+0.0
3,340,467	-	preA	HEPCGN_22815	0.56	-0.2
3,340,782	-	preA	HEPCGN_22815	0.82	-0.4
3,341,028	+				+1.3
3,341,028	+				-0.4
3,341,074	-				+2.6
3,341,074	-				-0.3
3,341,162	-	preT	HEPCGN_22820	0.13	-0.0
3,341,282	-	preT	HEPCGN_22820	0.23	-1.0
3,341,378	+	preT	HEPCGN_22820	0.30	-0.4
3,341,379	-	preT	HEPCGN_22820	0.30	+1.5
3,341,379	-	preT	HEPCGN_22820	0.30	+0.4
3,341,402	+	preT	HEPCGN_22820	0.32	-1.5
3,341,438	+	preT	HEPCGN_22820	0.35	+0.5
3,341,439	-	preT	HEPCGN_22820	0.35	+0.3
3,341,471	+	preT	HEPCGN_22820	0.38	+0.1
3,341,785	-	preT	HEPCGN_22820	0.63	-0.5
3,341,854	+	preT	HEPCGN_22820	0.69	-0.8
3,341,962	+	preT	HEPCGN_22820	0.77	+0.4
3,341,981	-	preT	HEPCGN_22820	0.79	-0.7
3,342,158	+				+0.1
3,342,259	+				-1.8
3,342,493	+	yeiS	HEPCGN_22825	0.24	-2.3
3,342,494	-	yeiS	HEPCGN_22825	0.25	+0.2
3,342,503	+	yeiS	HEPCGN_22825	0.28	-0.5
3,342,667	-				-0.4
3,342,667	-				+0.4
3,342,708	-				-0.3
3,342,732	+				-0.1
3,342,809	-	sanA	HEPCGN_22830	0.18	+0.0
3,342,932	-	sanA	HEPCGN_22830	0.35	+1.2
3,342,968	-	sanA	HEPCGN_22830	0.40	-1.1
3,343,165	+	sanA	HEPCGN_22830	0.68	-0.8
3,343,175	-	sanA	HEPCGN_22830	0.69	-1.8
3,343,203	+	sanA	HEPCGN_22830	0.73	-0.3