Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20155

Experiment: RB68

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB68
2,780,535	+	gabD	HEPCGN_20150	0.54	+0.6
2,780,634	-	gabD	HEPCGN_20150	0.61	+1.0
2,780,635	+	gabD	HEPCGN_20150	0.61	-0.4
2,780,635	+	gabD	HEPCGN_20150	0.61	+0.2
2,780,636	-	gabD	HEPCGN_20150	0.61	-1.0
2,780,778	+	gabD	HEPCGN_20150	0.71	+0.1
2,781,004	+	gabD	HEPCGN_20150	0.87	-0.2
2,781,018	-	gabD	HEPCGN_20150	0.88	-0.2
2,781,018	-	gabD	HEPCGN_20150	0.88	+0.1
2,781,180	+				-0.5
2,781,244	+				-0.0
2,781,339	-				-1.6
2,781,643	+	gabT	HEPCGN_20155	0.34	+0.0
2,781,643	+	gabT	HEPCGN_20155	0.34	-0.3
2,781,644	-	gabT	HEPCGN_20155	0.34	-0.9
2,781,644	-	gabT	HEPCGN_20155	0.34	-1.0
2,781,649	-	gabT	HEPCGN_20155	0.34	+0.9
2,781,875	-	gabT	HEPCGN_20155	0.52	-0.5
2,781,886	-	gabT	HEPCGN_20155	0.53	+0.8
2,782,103	+	gabT	HEPCGN_20155	0.70	+0.1
2,782,103	+	gabT	HEPCGN_20155	0.70	-1.0
2,782,103	+	gabT	HEPCGN_20155	0.70	-0.7
2,782,104	-	gabT	HEPCGN_20155	0.70	+2.4
2,782,389	-				-0.0
2,782,391	+				+0.7
2,782,392	-				+1.1
2,782,392	-				+1.0
2,782,414	-				+0.1
2,782,606	-				+0.3
2,782,879	+	gabP	HEPCGN_20160	0.11	-0.0
2,782,906	-	gabP	HEPCGN_20160	0.13	+1.1
2,782,911	+	gabP	HEPCGN_20160	0.13	+1.8
2,782,970	-	gabP	HEPCGN_20160	0.17	-1.6
2,783,004	+	gabP	HEPCGN_20160	0.20	+1.0
2,783,020	+	gabP	HEPCGN_20160	0.21	-0.9
2,783,020	+	gabP	HEPCGN_20160	0.21	-0.9
2,783,021	-	gabP	HEPCGN_20160	0.21	-0.2
2,783,021	-	gabP	HEPCGN_20160	0.21	+0.1
2,783,149	-	gabP	HEPCGN_20160	0.30	+0.2
2,783,163	+	gabP	HEPCGN_20160	0.31	-0.4
2,783,226	+	gabP	HEPCGN_20160	0.35	+0.5
2,783,266	+	gabP	HEPCGN_20160	0.38	+0.5
2,783,461	-	gabP	HEPCGN_20160	0.52	+0.6