Strain Fitness in Escherichia coli ECOR38 around HEPCGN_14550

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfaD and kbl are separated by 213 nucleotideskbl and tdh are separated by 9 nucleotides HEPCGN_14545: rfaD - ADP-glyceromanno-heptose 6-epimerase, at 1,662,481 to 1,663,413 rfaD HEPCGN_14550: kbl - glycine C-acetyltransferase, at 1,663,627 to 1,664,823 kbl HEPCGN_14555: tdh - L-threonine 3-dehydrogenase, at 1,664,833 to 1,665,858 tdh Position (kb) 1663 1664 1665Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1663.462 kb on - strandat 1663.462 kb on - strandat 1663.468 kb on - strandat 1663.468 kb on - strandat 1663.472 kb on + strandat 1663.472 kb on + strandat 1663.472 kb on + strandat 1663.527 kb on + strandat 1663.579 kb on + strandat 1663.592 kb on + strandat 1663.592 kb on + strandat 1663.592 kb on + strandat 1663.592 kb on + strandat 1663.593 kb on - strandat 1663.652 kb on + strandat 1663.708 kb on - strandat 1663.708 kb on - strandat 1663.710 kb on + strandat 1663.710 kb on + strandat 1663.731 kb on + strandat 1663.776 kb on + strand, within kblat 1663.777 kb on - strand, within kblat 1663.777 kb on - strand, within kblat 1663.777 kb on - strand, within kblat 1663.781 kb on - strand, within kblat 1663.893 kb on + strand, within kblat 1663.949 kb on - strand, within kblat 1664.013 kb on + strand, within kblat 1664.040 kb on + strand, within kblat 1664.040 kb on + strand, within kblat 1664.065 kb on - strand, within kblat 1664.065 kb on - strand, within kblat 1664.070 kb on + strand, within kblat 1664.070 kb on + strand, within kblat 1664.084 kb on - strand, within kblat 1664.230 kb on - strand, within kblat 1664.233 kb on + strand, within kblat 1664.233 kb on + strand, within kblat 1664.234 kb on - strand, within kblat 1664.234 kb on - strand, within kblat 1664.234 kb on - strand, within kblat 1664.252 kb on + strand, within kblat 1664.253 kb on - strand, within kblat 1664.270 kb on + strand, within kblat 1664.309 kb on - strand, within kblat 1664.335 kb on - strand, within kblat 1664.438 kb on - strand, within kblat 1664.580 kb on + strand, within kblat 1664.607 kb on + strand, within kblat 1664.678 kb on - strand, within kblat 1664.696 kb on - strand, within kblat 1664.696 kb on - strand, within kblat 1664.800 kb on - strandat 1664.907 kb on + strandat 1664.931 kb on + strandat 1664.965 kb on + strand, within tdhat 1664.965 kb on + strand, within tdhat 1664.965 kb on + strand, within tdhat 1664.966 kb on - strand, within tdhat 1664.966 kb on - strand, within tdhat 1664.966 kb on - strand, within tdhat 1664.966 kb on - strand, within tdhat 1664.966 kb on - strand, within tdhat 1664.967 kb on + strand, within tdhat 1664.968 kb on - strand, within tdhat 1665.025 kb on + strand, within tdhat 1665.026 kb on - strand, within tdhat 1665.026 kb on - strand, within tdhat 1665.026 kb on - strand, within tdhat 1665.041 kb on + strand, within tdhat 1665.042 kb on - strand, within tdhat 1665.046 kb on - strand, within tdhat 1665.046 kb on - strand, within tdhat 1665.103 kb on - strand, within tdhat 1665.202 kb on + strand, within tdhat 1665.247 kb on - strand, within tdhat 1665.298 kb on - strand, within tdhat 1665.360 kb on + strand, within tdhat 1665.360 kb on + strand, within tdhat 1665.360 kb on + strand, within tdhat 1665.361 kb on - strand, within tdhat 1665.361 kb on - strand, within tdhat 1665.363 kb on + strand, within tdhat 1665.492 kb on + strand, within tdhat 1665.492 kb on + strand, within tdhat 1665.574 kb on - strand, within tdhat 1665.606 kb on + strand, within tdhat 1665.660 kb on - strand, within tdhat 1665.660 kb on - strand, within tdh

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,663,462 - +1.5
1,663,462 - -1.0
1,663,468 - -0.4
1,663,468 - +0.6
1,663,472 + +1.3
1,663,472 + +0.1
1,663,472 + -0.2
1,663,527 + -0.0
1,663,579 + +0.2
1,663,592 + -0.9
1,663,592 + -1.0
1,663,592 + -1.0
1,663,592 + -0.0
1,663,593 - -0.6
1,663,652 + -1.0
1,663,708 - +0.2
1,663,708 - -0.4
1,663,710 + -0.7
1,663,710 + -0.1
1,663,731 + -0.3
1,663,776 + kbl HEPCGN_14550 0.12 +0.1
1,663,777 - kbl HEPCGN_14550 0.13 -0.8
1,663,777 - kbl HEPCGN_14550 0.13 +2.6
1,663,777 - kbl HEPCGN_14550 0.13 -0.7
1,663,781 - kbl HEPCGN_14550 0.13 +0.7
1,663,893 + kbl HEPCGN_14550 0.22 -0.2
1,663,949 - kbl HEPCGN_14550 0.27 -1.1
1,664,013 + kbl HEPCGN_14550 0.32 +0.5
1,664,040 + kbl HEPCGN_14550 0.35 +0.2
1,664,040 + kbl HEPCGN_14550 0.35 -0.6
1,664,065 - kbl HEPCGN_14550 0.37 -0.4
1,664,065 - kbl HEPCGN_14550 0.37 -0.9
1,664,070 + kbl HEPCGN_14550 0.37 -0.4
1,664,070 + kbl HEPCGN_14550 0.37 -0.7
1,664,084 - kbl HEPCGN_14550 0.38 -0.7
1,664,230 - kbl HEPCGN_14550 0.50 -0.8
1,664,233 + kbl HEPCGN_14550 0.51 -3.5
1,664,233 + kbl HEPCGN_14550 0.51 +0.2
1,664,234 - kbl HEPCGN_14550 0.51 +0.3
1,664,234 - kbl HEPCGN_14550 0.51 +0.8
1,664,234 - kbl HEPCGN_14550 0.51 -0.9
1,664,252 + kbl HEPCGN_14550 0.52 +0.1
1,664,253 - kbl HEPCGN_14550 0.52 -0.7
1,664,270 + kbl HEPCGN_14550 0.54 +0.1
1,664,309 - kbl HEPCGN_14550 0.57 -1.8
1,664,335 - kbl HEPCGN_14550 0.59 -0.1
1,664,438 - kbl HEPCGN_14550 0.68 -0.9
1,664,580 + kbl HEPCGN_14550 0.80 -0.4
1,664,607 + kbl HEPCGN_14550 0.82 +2.1
1,664,678 - kbl HEPCGN_14550 0.88 +0.3
1,664,696 - kbl HEPCGN_14550 0.89 +0.5
1,664,696 - kbl HEPCGN_14550 0.89 +0.6
1,664,800 - +0.1
1,664,907 + +0.3
1,664,931 + +0.0
1,664,965 + tdh HEPCGN_14555 0.13 -0.3
1,664,965 + tdh HEPCGN_14555 0.13 -1.2
1,664,965 + tdh HEPCGN_14555 0.13 +0.1
1,664,966 - tdh HEPCGN_14555 0.13 +0.7
1,664,966 - tdh HEPCGN_14555 0.13 -0.5
1,664,966 - tdh HEPCGN_14555 0.13 +0.1
1,664,966 - tdh HEPCGN_14555 0.13 +0.5
1,664,966 - tdh HEPCGN_14555 0.13 -1.0
1,664,967 + tdh HEPCGN_14555 0.13 +0.5
1,664,968 - tdh HEPCGN_14555 0.13 +0.7
1,665,025 + tdh HEPCGN_14555 0.19 +0.3
1,665,026 - tdh HEPCGN_14555 0.19 +0.1
1,665,026 - tdh HEPCGN_14555 0.19 +0.7
1,665,026 - tdh HEPCGN_14555 0.19 -0.4
1,665,041 + tdh HEPCGN_14555 0.20 +0.6
1,665,042 - tdh HEPCGN_14555 0.20 +1.5
1,665,046 - tdh HEPCGN_14555 0.21 -1.2
1,665,046 - tdh HEPCGN_14555 0.21 +0.5
1,665,103 - tdh HEPCGN_14555 0.26 -0.5
1,665,202 + tdh HEPCGN_14555 0.36 +0.1
1,665,247 - tdh HEPCGN_14555 0.40 +0.4
1,665,298 - tdh HEPCGN_14555 0.45 +0.6
1,665,360 + tdh HEPCGN_14555 0.51 -0.4
1,665,360 + tdh HEPCGN_14555 0.51 -0.3
1,665,360 + tdh HEPCGN_14555 0.51 +0.5
1,665,361 - tdh HEPCGN_14555 0.51 -2.4
1,665,361 - tdh HEPCGN_14555 0.51 +0.9
1,665,363 + tdh HEPCGN_14555 0.52 +0.2
1,665,492 + tdh HEPCGN_14555 0.64 +0.4
1,665,492 + tdh HEPCGN_14555 0.64 -0.9
1,665,574 - tdh HEPCGN_14555 0.72 -0.5
1,665,606 + tdh HEPCGN_14555 0.75 -1.2
1,665,660 - tdh HEPCGN_14555 0.81 -0.1
1,665,660 - tdh HEPCGN_14555 0.81 -1.4

Or see this region's nucleotide sequence