Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08770

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaraC and araB are separated by 338 nucleotidesaraB and araA are separated by 10 nucleotides HEPCGN_08765: araC - arabinose operon transcriptional regulator AraC, at 492,745 to 493,590 araC HEPCGN_08770: araB - ribulokinase, at 493,929 to 495,629 araB HEPCGN_08775: araA - L-arabinose isomerase, at 495,640 to 497,142 araA Position (kb) 493 494 495 496Strain fitness (log2 ratio) -2 -1 0 1 2 3at 493.037 kb on + strand, within araCat 493.266 kb on + strand, within araCat 493.347 kb on - strand, within araCat 493.347 kb on - strand, within araCat 493.380 kb on + strand, within araCat 493.380 kb on + strand, within araCat 493.456 kb on - strand, within araCat 493.458 kb on - strand, within araCat 493.523 kb on - strandat 493.591 kb on - strandat 493.705 kb on + strandat 493.708 kb on + strandat 493.708 kb on + strandat 493.708 kb on + strandat 493.709 kb on - strandat 493.771 kb on + strandat 493.771 kb on + strandat 494.021 kb on - strandat 494.097 kb on + strandat 494.190 kb on - strand, within araBat 494.190 kb on - strand, within araBat 494.278 kb on + strand, within araBat 494.279 kb on - strand, within araBat 494.329 kb on + strand, within araBat 494.364 kb on + strand, within araBat 494.364 kb on + strand, within araBat 494.366 kb on + strand, within araBat 494.379 kb on + strand, within araBat 494.546 kb on + strand, within araBat 494.546 kb on + strand, within araBat 494.652 kb on - strand, within araBat 494.684 kb on - strand, within araBat 494.797 kb on + strand, within araBat 494.810 kb on + strand, within araBat 494.810 kb on + strand, within araBat 494.810 kb on + strand, within araBat 494.952 kb on + strand, within araBat 494.952 kb on + strand, within araBat 494.952 kb on + strand, within araBat 494.952 kb on + strand, within araBat 495.577 kb on - strandat 495.626 kb on - strandat 495.626 kb on - strandat 495.627 kb on + strandat 495.658 kb on + strandat 495.658 kb on + strandat 495.659 kb on - strandat 495.674 kb on + strandat 495.695 kb on - strandat 495.999 kb on + strand, within araAat 496.260 kb on + strand, within araAat 496.261 kb on - strand, within araAat 496.336 kb on + strand, within araAat 496.349 kb on - strand, within araAat 496.517 kb on + strand, within araA

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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493,037 + araC HEPCGN_08765 0.35 -0.1
493,266 + araC HEPCGN_08765 0.62 +2.4
493,347 - araC HEPCGN_08765 0.71 -0.2
493,347 - araC HEPCGN_08765 0.71 -0.2
493,380 + araC HEPCGN_08765 0.75 +0.5
493,380 + araC HEPCGN_08765 0.75 +0.3
493,456 - araC HEPCGN_08765 0.84 -1.4
493,458 - araC HEPCGN_08765 0.84 -0.5
493,523 - +0.5
493,591 - -0.0
493,705 + -1.7
493,708 + +0.4
493,708 + -0.2
493,708 + +0.3
493,709 - +0.5
493,771 + +0.5
493,771 + -0.2
494,021 - -0.2
494,097 + -2.2
494,190 - araB HEPCGN_08770 0.15 -0.8
494,190 - araB HEPCGN_08770 0.15 -0.2
494,278 + araB HEPCGN_08770 0.21 +0.1
494,279 - araB HEPCGN_08770 0.21 -0.0
494,329 + araB HEPCGN_08770 0.24 +0.4
494,364 + araB HEPCGN_08770 0.26 -0.2
494,364 + araB HEPCGN_08770 0.26 +0.4
494,366 + araB HEPCGN_08770 0.26 -0.3
494,379 + araB HEPCGN_08770 0.26 +0.1
494,546 + araB HEPCGN_08770 0.36 +0.8
494,546 + araB HEPCGN_08770 0.36 -0.5
494,652 - araB HEPCGN_08770 0.43 -0.7
494,684 - araB HEPCGN_08770 0.44 +0.3
494,797 + araB HEPCGN_08770 0.51 +0.5
494,810 + araB HEPCGN_08770 0.52 -0.3
494,810 + araB HEPCGN_08770 0.52 -1.0
494,810 + araB HEPCGN_08770 0.52 -1.6
494,952 + araB HEPCGN_08770 0.60 +0.1
494,952 + araB HEPCGN_08770 0.60 -0.3
494,952 + araB HEPCGN_08770 0.60 +0.1
494,952 + araB HEPCGN_08770 0.60 +0.2
495,577 - +3.3
495,626 - +0.1
495,626 - -0.3
495,627 + -1.5
495,658 + +0.1
495,658 + -0.8
495,659 - +0.2
495,674 + -0.0
495,695 - -0.1
495,999 + araA HEPCGN_08775 0.24 -0.5
496,260 + araA HEPCGN_08775 0.41 +0.5
496,261 - araA HEPCGN_08775 0.41 -0.1
496,336 + araA HEPCGN_08775 0.46 -0.0
496,349 - araA HEPCGN_08775 0.47 -0.8
496,517 + araA HEPCGN_08775 0.58 -0.3

Or see this region's nucleotide sequence