Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiO and glnQ are separated by 116 nucleotides glnQ and glnP overlap by 4 nucleotides glnP and glnH are separated by 138 nucleotides
HEPCGN_01815: ybiO - mechanosensitive channel protein, at 286,927 to 289,152
ybiO
HEPCGN_01820: glnQ - glutamine ABC transporter ATP-binding protein GlnQ, at 289,269 to 289,991
glnQ
HEPCGN_01825: glnP - glutamine ABC transporter permease GlnP, at 289,988 to 290,647
glnP
HEPCGN_01830: glnH - glutamine ABC transporter substrate-binding protein GlnH, at 290,786 to 291,532
glnH
Position (kb) 289
290 Strain fitness (log2 ratio) -1
0
1 at 288.271 kb on + strand, within ybiO at 288.271 kb on + strand, within ybiO at 288.272 kb on - strand, within ybiO at 288.278 kb on - strand, within ybiO at 288.323 kb on + strand, within ybiO at 288.437 kb on - strand, within ybiO at 288.532 kb on + strand, within ybiO at 288.712 kb on + strand, within ybiO at 288.713 kb on - strand, within ybiO at 288.715 kb on + strand, within ybiO at 288.722 kb on - strand, within ybiO at 288.765 kb on + strand, within ybiO at 289.185 kb on + strand at 289.185 kb on + strand at 289.186 kb on - strand at 289.190 kb on - strand at 289.191 kb on + strand at 289.191 kb on + strand at 289.191 kb on + strand at 289.192 kb on - strand at 289.387 kb on - strand, within glnQ at 289.458 kb on - strand, within glnQ at 290.153 kb on - strand, within glnP at 290.209 kb on + strand, within glnP at 290.210 kb on - strand, within glnP at 290.302 kb on + strand, within glnP at 290.424 kb on + strand, within glnP at 290.428 kb on + strand, within glnP at 290.449 kb on + strand, within glnP at 290.450 kb on - strand, within glnP at 290.450 kb on - strand, within glnP at 290.647 kb on + strand at 290.647 kb on + strand at 290.647 kb on + strand at 290.648 kb on - strand at 290.672 kb on - strand at 290.690 kb on + strand at 290.695 kb on - strand at 290.728 kb on + strand at 290.770 kb on + strand at 290.830 kb on - strand at 290.908 kb on + strand, within glnH at 290.914 kb on - strand, within glnH at 290.980 kb on - strand, within glnH
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 288,271 + ybiO HEPCGN_01815 0.60 +0.6 288,271 + ybiO HEPCGN_01815 0.60 -0.8 288,272 - ybiO HEPCGN_01815 0.60 +0.2 288,278 - ybiO HEPCGN_01815 0.61 -0.3 288,323 + ybiO HEPCGN_01815 0.63 -0.3 288,437 - ybiO HEPCGN_01815 0.68 -0.3 288,532 + ybiO HEPCGN_01815 0.72 -0.5 288,712 + ybiO HEPCGN_01815 0.80 -1.3 288,713 - ybiO HEPCGN_01815 0.80 -1.2 288,715 + ybiO HEPCGN_01815 0.80 +0.7 288,722 - ybiO HEPCGN_01815 0.81 +0.8 288,765 + ybiO HEPCGN_01815 0.83 -0.3 289,185 + +0.2 289,185 + -0.1 289,186 - -0.2 289,190 - +0.0 289,191 + -0.4 289,191 + -0.2 289,191 + -0.1 289,192 - +0.1 289,387 - glnQ HEPCGN_01820 0.16 -0.8 289,458 - glnQ HEPCGN_01820 0.26 -1.0 290,153 - glnP HEPCGN_01825 0.25 +1.4 290,209 + glnP HEPCGN_01825 0.33 -0.2 290,210 - glnP HEPCGN_01825 0.34 -1.1 290,302 + glnP HEPCGN_01825 0.48 -0.3 290,424 + glnP HEPCGN_01825 0.66 +0.1 290,428 + glnP HEPCGN_01825 0.67 -0.8 290,449 + glnP HEPCGN_01825 0.70 -0.1 290,450 - glnP HEPCGN_01825 0.70 +0.1 290,450 - glnP HEPCGN_01825 0.70 -0.4 290,647 + -0.8 290,647 + +0.5 290,647 + +0.5 290,648 - +1.5 290,672 - +0.4 290,690 + +1.7 290,695 - +0.2 290,728 + +0.5 290,770 + -0.9 290,830 - -0.3 290,908 + glnH HEPCGN_01830 0.16 -0.8 290,914 - glnH HEPCGN_01830 0.17 -0.1 290,980 - glnH HEPCGN_01830 0.26 +0.0
Or see this region's nucleotide sequence