Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_00210 and HEPCGN_00215 overlap by 4 nucleotides HEPCGN_00215 and HEPCGN_00220 are separated by 639 nucleotides
HEPCGN_00210: HEPCGN_00210 - addiction module killer protein, at 12,331 to 12,666
_00210
HEPCGN_00215: HEPCGN_00215 - DNA-binding protein, at 12,663 to 13,013
_00215
HEPCGN_00220: HEPCGN_00220 - molecular chaperone DnaJ, at 13,653 to 14,168
_00220
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1 at 11.710 kb on + strand at 11.773 kb on + strand at 11.909 kb on - strand at 12.021 kb on + strand at 12.021 kb on + strand at 12.095 kb on + strand at 12.095 kb on + strand at 12.095 kb on + strand at 12.095 kb on + strand at 12.099 kb on + strand at 12.099 kb on + strand at 12.171 kb on + strand at 12.171 kb on + strand at 12.172 kb on - strand at 12.184 kb on - strand at 12.187 kb on + strand at 12.187 kb on + strand at 12.240 kb on + strand at 12.379 kb on + strand, within HEPCGN_00210 at 12.380 kb on - strand, within HEPCGN_00210 at 12.408 kb on + strand, within HEPCGN_00210 at 12.408 kb on + strand, within HEPCGN_00210 at 12.500 kb on + strand, within HEPCGN_00210 at 12.500 kb on + strand, within HEPCGN_00210 at 12.500 kb on + strand, within HEPCGN_00210 at 12.520 kb on + strand, within HEPCGN_00210 at 12.520 kb on + strand, within HEPCGN_00210 at 12.541 kb on + strand, within HEPCGN_00210 at 12.542 kb on - strand, within HEPCGN_00210 at 12.631 kb on + strand, within HEPCGN_00210 at 12.632 kb on - strand, within HEPCGN_00210 at 12.847 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.965 kb on + strand, within HEPCGN_00215 at 12.999 kb on - strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.011 kb on + strand at 13.012 kb on - strand at 13.066 kb on + strand at 13.067 kb on - strand at 13.092 kb on + strand at 13.107 kb on - strand at 13.144 kb on - strand at 13.168 kb on + strand at 13.169 kb on - strand at 13.169 kb on - strand at 13.181 kb on + strand at 13.182 kb on - strand at 13.187 kb on + strand at 13.188 kb on - strand at 13.188 kb on - strand at 13.188 kb on - strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.192 kb on + strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.193 kb on - strand at 13.198 kb on + strand at 13.198 kb on + strand at 13.198 kb on + strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.199 kb on - strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.203 kb on + strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.204 kb on - strand at 13.210 kb on - strand at 13.214 kb on + strand at 13.699 kb on + strand at 13.810 kb on + strand, within HEPCGN_00220 at 13.810 kb on + strand, within HEPCGN_00220 at 13.823 kb on + strand, within HEPCGN_00220 at 13.872 kb on - strand, within HEPCGN_00220 at 13.897 kb on + strand, within HEPCGN_00220
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 11,710 + +0.1 11,773 + +0.4 11,909 - +0.7 12,021 + -0.1 12,021 + -0.1 12,095 + +0.0 12,095 + +0.1 12,095 + +1.7 12,095 + +0.9 12,099 + -0.3 12,099 + -0.5 12,171 + -0.7 12,171 + -0.9 12,172 - +0.5 12,184 - +1.5 12,187 + -0.2 12,187 + -0.4 12,240 + +1.3 12,379 + HEPCGN_00210 0.14 +0.3 12,380 - HEPCGN_00210 0.15 -0.3 12,408 + HEPCGN_00210 0.23 +0.0 12,408 + HEPCGN_00210 0.23 -0.4 12,500 + HEPCGN_00210 0.50 -0.6 12,500 + HEPCGN_00210 0.50 +0.3 12,500 + HEPCGN_00210 0.50 +0.4 12,520 + HEPCGN_00210 0.56 -0.5 12,520 + HEPCGN_00210 0.56 +0.3 12,541 + HEPCGN_00210 0.62 -0.0 12,542 - HEPCGN_00210 0.63 -1.6 12,631 + HEPCGN_00210 0.89 +0.3 12,632 - HEPCGN_00210 0.90 +0.5 12,847 + HEPCGN_00215 0.52 -0.2 12,965 + HEPCGN_00215 0.86 +0.7 12,965 + HEPCGN_00215 0.86 +0.1 12,965 + HEPCGN_00215 0.86 +1.7 12,999 - +0.5 13,011 + -0.4 13,011 + -0.3 13,011 + -0.4 13,011 + -0.5 13,011 + +0.1 13,012 - +1.2 13,066 + +0.7 13,067 - -0.7 13,092 + +0.9 13,107 - +1.1 13,144 - -0.2 13,168 + +0.2 13,169 - +0.5 13,169 - -0.1 13,181 + -0.5 13,182 - +1.5 13,187 + -1.2 13,188 - -0.4 13,188 - -0.1 13,188 - -1.3 13,192 + +0.4 13,192 + +0.4 13,192 + -0.3 13,192 + -0.0 13,193 - -0.4 13,193 - -1.5 13,193 - -0.1 13,193 - +0.5 13,193 - +0.4 13,193 - -0.1 13,198 + +0.9 13,198 + +0.3 13,198 + +0.2 13,199 - -0.2 13,199 - +0.2 13,199 - -0.1 13,199 - +0.8 13,199 - -0.4 13,203 + -0.1 13,203 + -1.5 13,203 + +0.0 13,203 + +0.0 13,203 + +0.4 13,204 - +0.1 13,204 - -0.2 13,204 - -0.2 13,204 - +0.3 13,210 - -0.6 13,214 + +0.3 13,699 + +0.2 13,810 + HEPCGN_00220 0.30 +0.4 13,810 + HEPCGN_00220 0.30 +0.2 13,823 + HEPCGN_00220 0.33 +0.2 13,872 - HEPCGN_00220 0.42 -0.6 13,897 + HEPCGN_00220 0.47 +0.6
Or see this region's nucleotide sequence