Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS11730

Experiment: Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS11720 and HMPREF1181_RS11730 are separated by 908 nucleotidesHMPREF1181_RS11730 and HMPREF1181_RS11735 are separated by 365 nucleotides HMPREF1181_RS11720: HMPREF1181_RS11720 - DNA/RNA non-specific endonuclease, at 347,622 to 348,413 _RS11720 HMPREF1181_RS11730: HMPREF1181_RS11730 - hypothetical protein, at 349,322 to 349,780 _RS11730 HMPREF1181_RS11735: HMPREF1181_RS11735 - hypothetical protein, at 350,146 to 350,760 _RS11735 Position (kb) 349 350Strain fitness (log2 ratio) -2 -1 0 1 2at 348.380 kb on - strandat 348.380 kb on - strandat 348.459 kb on + strandat 348.459 kb on + strandat 348.460 kb on - strandat 348.466 kb on - strandat 348.526 kb on - strandat 348.602 kb on + strandat 348.647 kb on + strandat 348.647 kb on + strandat 348.650 kb on + strandat 348.650 kb on + strandat 348.668 kb on - strandat 348.668 kb on - strandat 348.669 kb on + strandat 348.677 kb on + strandat 348.678 kb on - strandat 348.688 kb on + strandat 348.699 kb on + strandat 348.700 kb on - strandat 348.700 kb on - strandat 348.700 kb on - strandat 348.716 kb on + strandat 348.764 kb on - strandat 348.764 kb on - strandat 348.827 kb on + strandat 348.828 kb on - strandat 348.845 kb on - strandat 348.845 kb on - strandat 348.849 kb on + strandat 348.882 kb on - strandat 348.898 kb on - strandat 348.907 kb on + strandat 348.907 kb on + strandat 348.958 kb on + strandat 348.961 kb on - strandat 348.977 kb on - strandat 349.018 kb on - strandat 349.023 kb on + strandat 349.066 kb on - strandat 349.131 kb on + strandat 349.166 kb on + strandat 349.175 kb on + strandat 349.190 kb on + strandat 349.236 kb on + strandat 349.273 kb on + strandat 349.322 kb on - strandat 349.340 kb on + strandat 349.453 kb on - strand, within HMPREF1181_RS11730at 349.458 kb on - strand, within HMPREF1181_RS11730at 349.465 kb on + strand, within HMPREF1181_RS11730at 349.472 kb on + strand, within HMPREF1181_RS11730at 349.486 kb on + strand, within HMPREF1181_RS11730at 349.487 kb on - strand, within HMPREF1181_RS11730at 349.517 kb on + strand, within HMPREF1181_RS11730at 349.656 kb on + strand, within HMPREF1181_RS11730at 349.782 kb on - strandat 349.785 kb on - strandat 349.785 kb on - strandat 349.797 kb on - strandat 349.904 kb on + strandat 350.042 kb on + strandat 350.098 kb on - strandat 350.146 kb on - strandat 350.152 kb on - strandat 350.228 kb on + strand, within HMPREF1181_RS11735at 350.322 kb on + strand, within HMPREF1181_RS11735at 350.323 kb on - strand, within HMPREF1181_RS11735at 350.323 kb on - strand, within HMPREF1181_RS11735at 350.325 kb on - strand, within HMPREF1181_RS11735at 350.342 kb on + strand, within HMPREF1181_RS11735at 350.343 kb on - strand, within HMPREF1181_RS11735at 350.375 kb on - strand, within HMPREF1181_RS11735at 350.382 kb on + strand, within HMPREF1181_RS11735at 350.409 kb on + strand, within HMPREF1181_RS11735at 350.410 kb on - strand, within HMPREF1181_RS11735at 350.439 kb on - strand, within HMPREF1181_RS11735at 350.439 kb on - strand, within HMPREF1181_RS11735at 350.492 kb on + strand, within HMPREF1181_RS11735at 350.509 kb on + strand, within HMPREF1181_RS11735at 350.509 kb on + strand, within HMPREF1181_RS11735at 350.554 kb on + strand, within HMPREF1181_RS11735at 350.558 kb on - strand, within HMPREF1181_RS11735at 350.558 kb on - strand, within HMPREF1181_RS11735at 350.586 kb on + strand, within HMPREF1181_RS11735at 350.586 kb on + strand, within HMPREF1181_RS11735at 350.586 kb on + strand, within HMPREF1181_RS11735at 350.587 kb on - strand, within HMPREF1181_RS11735at 350.587 kb on - strand, within HMPREF1181_RS11735at 350.587 kb on - strand, within HMPREF1181_RS11735at 350.656 kb on + strand, within HMPREF1181_RS11735at 350.656 kb on + strand, within HMPREF1181_RS11735at 350.657 kb on - strand, within HMPREF1181_RS11735

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Per-strain Table

Position Strand Gene LocusTag Fraction Rhamnogalacturonan I from potato pectic fiber 2.5 mg/ml (C)
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348,380 - +1.0
348,380 - -0.3
348,459 + -0.2
348,459 + -0.5
348,460 - -0.7
348,466 - +1.0
348,526 - +0.4
348,602 + -1.5
348,647 + -0.0
348,647 + +0.8
348,650 + -0.7
348,650 + +1.9
348,668 - +0.4
348,668 - +0.2
348,669 + +0.8
348,677 + +0.2
348,678 - -0.3
348,688 + +1.2
348,699 + +0.6
348,700 - +0.2
348,700 - +0.5
348,700 - +1.0
348,716 + +0.4
348,764 - +1.8
348,764 - +0.4
348,827 + -0.4
348,828 - +0.4
348,845 - -0.3
348,845 - -0.1
348,849 + -0.8
348,882 - +0.5
348,898 - +0.7
348,907 + +0.9
348,907 + -0.5
348,958 + +0.4
348,961 - -0.0
348,977 - -2.0
349,018 - +0.2
349,023 + +0.4
349,066 - -0.1
349,131 + -0.3
349,166 + +0.8
349,175 + -0.2
349,190 + -0.7
349,236 + -0.4
349,273 + -0.4
349,322 - +0.6
349,340 + +0.6
349,453 - HMPREF1181_RS11730 0.29 +1.1
349,458 - HMPREF1181_RS11730 0.30 +0.5
349,465 + HMPREF1181_RS11730 0.31 -0.0
349,472 + HMPREF1181_RS11730 0.33 -0.9
349,486 + HMPREF1181_RS11730 0.36 +0.5
349,487 - HMPREF1181_RS11730 0.36 +0.4
349,517 + HMPREF1181_RS11730 0.42 +0.1
349,656 + HMPREF1181_RS11730 0.73 -1.3
349,782 - +0.3
349,785 - +0.3
349,785 - +0.3
349,797 - -0.2
349,904 + -0.6
350,042 + +0.4
350,098 - -0.1
350,146 - +0.0
350,152 - -0.9
350,228 + HMPREF1181_RS11735 0.13 -0.0
350,322 + HMPREF1181_RS11735 0.29 -0.3
350,323 - HMPREF1181_RS11735 0.29 +0.8
350,323 - HMPREF1181_RS11735 0.29 +0.5
350,325 - HMPREF1181_RS11735 0.29 +0.8
350,342 + HMPREF1181_RS11735 0.32 -0.8
350,343 - HMPREF1181_RS11735 0.32 -1.4
350,375 - HMPREF1181_RS11735 0.37 +0.7
350,382 + HMPREF1181_RS11735 0.38 +0.8
350,409 + HMPREF1181_RS11735 0.43 +0.9
350,410 - HMPREF1181_RS11735 0.43 +0.5
350,439 - HMPREF1181_RS11735 0.48 -0.4
350,439 - HMPREF1181_RS11735 0.48 -0.8
350,492 + HMPREF1181_RS11735 0.56 +0.6
350,509 + HMPREF1181_RS11735 0.59 +0.3
350,509 + HMPREF1181_RS11735 0.59 -0.3
350,554 + HMPREF1181_RS11735 0.66 +0.3
350,558 - HMPREF1181_RS11735 0.67 +0.3
350,558 - HMPREF1181_RS11735 0.67 +1.2
350,586 + HMPREF1181_RS11735 0.72 -1.5
350,586 + HMPREF1181_RS11735 0.72 +1.2
350,586 + HMPREF1181_RS11735 0.72 +0.4
350,587 - HMPREF1181_RS11735 0.72 +0.6
350,587 - HMPREF1181_RS11735 0.72 -0.2
350,587 - HMPREF1181_RS11735 0.72 +1.2
350,656 + HMPREF1181_RS11735 0.83 -0.5
350,656 + HMPREF1181_RS11735 0.83 +1.7
350,657 - HMPREF1181_RS11735 0.83 +0.9

Or see this region's nucleotide sequence