Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16885

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurA_D396N and sfsB are separated by 47 nucleotidessfsB and ispB are separated by 227 nucleotides HEPCGN_16880: murA_D396N - UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA, at 2,125,494 to 2,126,753 _D396N HEPCGN_16885: sfsB - DNA-binding transcriptional regulator SfsB, at 2,126,801 to 2,127,079 sfsB HEPCGN_16890: ispB - octaprenyl diphosphate synthase, at 2,127,307 to 2,128,278 ispB Position (kb) 2126 2127 2128Strain fitness (log2 ratio) -1 0 1at 2126.752 kb on - strandat 2126.752 kb on - strandat 2126.752 kb on - strandat 2126.815 kb on + strandat 2126.821 kb on - strandat 2126.821 kb on - strandat 2126.824 kb on + strandat 2126.825 kb on - strandat 2126.825 kb on - strandat 2126.825 kb on - strandat 2126.923 kb on + strand, within sfsBat 2127.094 kb on + strandat 2127.095 kb on - strandat 2127.099 kb on + strandat 2127.141 kb on - strandat 2127.211 kb on + strandat 2127.211 kb on + strandat 2127.211 kb on + strandat 2127.211 kb on + strandat 2127.211 kb on + strandat 2127.211 kb on + strandat 2127.211 kb on + strandat 2127.212 kb on - strandat 2127.212 kb on - strandat 2127.233 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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2,126,752 - +1.2
2,126,752 - -1.1
2,126,752 - +1.5
2,126,815 + -0.8
2,126,821 - -0.3
2,126,821 - +0.4
2,126,824 + +0.4
2,126,825 - +1.0
2,126,825 - +0.7
2,126,825 - -0.7
2,126,923 + sfsB HEPCGN_16885 0.44 -1.3
2,127,094 + -0.5
2,127,095 - +0.4
2,127,099 + -0.1
2,127,141 - -0.1
2,127,211 + +0.7
2,127,211 + +0.4
2,127,211 + +0.6
2,127,211 + +0.2
2,127,211 + +0.4
2,127,211 + -0.4
2,127,211 + +0.0
2,127,212 - +0.8
2,127,212 - +1.2
2,127,233 + +0.4

Or see this region's nucleotide sequence