Strain Fitness in Escherichia coli ECOR38 around HEPCGN_12200

Experiment: Phi92

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Phi92
1,180,080	+	trmA	HEPCGN_12190	0.49	+0.2
1,180,081	-	trmA	HEPCGN_12190	0.49	+0.9
1,180,081	-	trmA	HEPCGN_12190	0.49	+1.9
1,180,081	-	trmA	HEPCGN_12190	0.49	-0.4
1,180,127	+	trmA	HEPCGN_12190	0.53	+3.0
1,180,191	+	trmA	HEPCGN_12190	0.59	+0.4
1,180,191	+	trmA	HEPCGN_12190	0.59	-1.5
1,180,192	-	trmA	HEPCGN_12190	0.59	+1.2
1,180,246	+	trmA	HEPCGN_12190	0.64	+0.9
1,180,247	-	trmA	HEPCGN_12190	0.64	+1.3
1,180,313	+	trmA	HEPCGN_12190	0.70	-1.3
1,180,314	-	trmA	HEPCGN_12190	0.70	+1.8
1,180,326	-	trmA	HEPCGN_12190	0.71	+0.8
1,180,332	-	trmA	HEPCGN_12190	0.72	+0.8
1,180,494	-	trmA	HEPCGN_12190	0.87	+0.6
1,180,494	-	trmA	HEPCGN_12190	0.87	+0.1
1,180,500	+	trmA	HEPCGN_12190	0.87	-0.2
1,180,500	+	trmA	HEPCGN_12190	0.87	+0.6
1,180,500	+	trmA	HEPCGN_12190	0.87	+1.4
1,180,500	+	trmA	HEPCGN_12190	0.87	+0.1
1,180,501	-	trmA	HEPCGN_12190	0.87	+0.4
1,180,502	+	trmA	HEPCGN_12190	0.87	+0.2
1,180,502	+	trmA	HEPCGN_12190	0.87	+1.0
1,180,503	-	trmA	HEPCGN_12190	0.87	-0.2
1,180,503	-	trmA	HEPCGN_12190	0.87	-0.7
1,180,503	-	trmA	HEPCGN_12190	0.87	-0.5
1,180,526	-	trmA	HEPCGN_12190	0.90	-0.2
1,180,526	-	trmA	HEPCGN_12190	0.90	+1.1
1,180,546	+				+0.2
1,180,621	+				+0.4
1,180,638	+				+0.0
1,180,639	-				+0.2
1,180,646	-				-0.2
1,180,681	+				-0.2
1,180,681	+				-0.5
1,180,681	+				-0.3
1,180,749	+	yijD	HEPCGN_12195	0.19	-0.7
1,180,798	-	yijD	HEPCGN_12195	0.33	-0.0
1,180,808	-	yijD	HEPCGN_12195	0.36	+1.5
1,180,898	-	yijD	HEPCGN_12195	0.61	+0.6
1,180,920	-	yijD	HEPCGN_12195	0.67	-0.7
1,180,920	-	yijD	HEPCGN_12195	0.67	+0.2
1,181,012	+				-1.5
1,181,012	+				+0.2
1,181,013	-				+0.1
1,181,013	-				-0.3
1,181,013	-				-0.1
1,181,018	+				-0.3
1,181,100	+				+0.5
1,181,100	+				+1.2
1,181,104	-				+0.4
1,181,136	-	fabR	HEPCGN_12200	0.14	+1.7
1,181,275	-	fabR	HEPCGN_12200	0.33	+0.3
1,181,383	+	fabR	HEPCGN_12200	0.49	+0.6
1,181,401	+	fabR	HEPCGN_12200	0.51	+1.0
1,181,402	-	fabR	HEPCGN_12200	0.51	+3.1
1,181,478	-	fabR	HEPCGN_12200	0.62	-0.1
1,181,618	+	fabR	HEPCGN_12200	0.82	+1.2
1,181,618	+	fabR	HEPCGN_12200	0.82	+0.7
1,181,619	-	fabR	HEPCGN_12200	0.82	+2.4
1,181,678	+				+0.4
1,181,679	-				+0.4
1,181,713	+				-0.6
1,181,725	+				+1.2
1,181,725	+				+0.1
1,181,728	-				-0.7
1,181,744	-				-0.3
1,181,776	-				+0.3
1,181,776	-				-0.2
1,181,783	+				+0.5
1,181,790	+				+0.6
1,181,791	-				-1.2
1,181,794	+				-0.2
1,181,794	+				+0.8
1,181,795	-				+0.0
1,181,824	+				-0.1
1,181,824	+				-1.1
1,181,875	+				-1.8
1,181,929	+				+1.3
1,181,930	-				+0.4
1,181,930	-				-2.3
1,181,938	-				-1.8
1,181,998	+				+3.7
1,182,053	-				-0.9
1,182,053	-				-0.2
1,182,055	+				-0.1
1,182,055	+				-0.9
1,182,098	+				+0.9
1,182,210	-	sthA	HEPCGN_12205	0.13	-0.1
1,182,211	+	sthA	HEPCGN_12205	0.14	-1.1
1,182,211	+	sthA	HEPCGN_12205	0.14	+0.4
1,182,212	-	sthA	HEPCGN_12205	0.14	+1.9
1,182,234	+	sthA	HEPCGN_12205	0.15	-0.7
1,182,333	+	sthA	HEPCGN_12205	0.22	+0.9
1,182,333	+	sthA	HEPCGN_12205	0.22	+1.4
1,182,341	+	sthA	HEPCGN_12205	0.23	+0.2
1,182,389	+	sthA	HEPCGN_12205	0.26	+0.9
1,182,389	+	sthA	HEPCGN_12205	0.26	+0.4
1,182,511	-	sthA	HEPCGN_12205	0.35	+0.0
1,182,557	-	sthA	HEPCGN_12205	0.38	+0.9
1,182,557	-	sthA	HEPCGN_12205	0.38	-1.5
1,182,561	-	sthA	HEPCGN_12205	0.39	+1.9
1,182,561	-	sthA	HEPCGN_12205	0.39	-1.5
1,182,561	-	sthA	HEPCGN_12205	0.39	+2.7
1,182,565	-	sthA	HEPCGN_12205	0.39	+0.2
1,182,620	-	sthA	HEPCGN_12205	0.43	+2.4
1,182,739	-	sthA	HEPCGN_12205	0.51	+0.6