Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_10430 and yjfJ are separated by 49 nucleotides yjfJ and yjfI are separated by 18 nucleotides yjfI and rlmB are separated by 126 nucleotides
HEPCGN_10430: HEPCGN_10430 - DUF2491 domain-containing protein, at 828,099 to 828,758
_10430
HEPCGN_10435: yjfJ - Uncharacterized protein YjfJ, at 828,808 to 829,506
yjfJ
HEPCGN_10440: yjfI - Uncharacterized protein YjfI, at 829,525 to 829,926
yjfI
HEPCGN_10445: rlmB - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 830,053 to 830,784
rlmB
Position (kb) 829
830 Strain fitness (log2 ratio) -1
0
1 at 828.541 kb on + strand, within HEPCGN_10430 at 828.544 kb on + strand, within HEPCGN_10430 at 828.599 kb on + strand, within HEPCGN_10430 at 828.601 kb on + strand, within HEPCGN_10430 at 828.601 kb on + strand, within HEPCGN_10430 at 828.601 kb on + strand, within HEPCGN_10430 at 828.602 kb on - strand, within HEPCGN_10430 at 828.720 kb on - strand at 828.720 kb on - strand at 828.758 kb on + strand at 828.758 kb on + strand at 828.770 kb on - strand at 828.775 kb on - strand at 828.838 kb on + strand at 828.841 kb on + strand at 828.841 kb on + strand at 828.842 kb on - strand at 828.842 kb on - strand at 828.861 kb on + strand at 829.032 kb on + strand, within yjfJ at 829.074 kb on + strand, within yjfJ at 829.075 kb on - strand, within yjfJ at 829.486 kb on + strand at 829.720 kb on - strand, within yjfI at 829.761 kb on + strand, within yjfI at 829.791 kb on + strand, within yjfI at 829.999 kb on + strand at 830.080 kb on + strand at 830.080 kb on + strand at 830.181 kb on + strand, within rlmB at 830.182 kb on - strand, within rlmB at 830.182 kb on - strand, within rlmB at 830.237 kb on + strand, within rlmB at 830.244 kb on + strand, within rlmB at 830.244 kb on + strand, within rlmB at 830.245 kb on - strand, within rlmB at 830.298 kb on + strand, within rlmB at 830.299 kb on - strand, within rlmB at 830.547 kb on - strand, within rlmB at 830.686 kb on - strand, within rlmB at 830.686 kb on - strand, within rlmB at 830.686 kb on - strand, within rlmB at 830.789 kb on - strand at 830.791 kb on - strand at 830.836 kb on - strand at 830.871 kb on - strand at 830.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 828,541 + HEPCGN_10430 0.67 -0.2 828,544 + HEPCGN_10430 0.67 +0.5 828,599 + HEPCGN_10430 0.76 -0.7 828,601 + HEPCGN_10430 0.76 +0.4 828,601 + HEPCGN_10430 0.76 +0.5 828,601 + HEPCGN_10430 0.76 +0.6 828,602 - HEPCGN_10430 0.76 -0.2 828,720 - +0.2 828,720 - +0.4 828,758 + -0.6 828,758 + +0.0 828,770 - +0.9 828,775 - -0.0 828,838 + +1.3 828,841 + +0.5 828,841 + +0.5 828,842 - +1.7 828,842 - +1.3 828,861 + -0.1 829,032 + yjfJ HEPCGN_10435 0.32 -1.7 829,074 + yjfJ HEPCGN_10435 0.38 +0.1 829,075 - yjfJ HEPCGN_10435 0.38 -1.4 829,486 + -0.1 829,720 - yjfI HEPCGN_10440 0.49 +0.3 829,761 + yjfI HEPCGN_10440 0.59 -0.4 829,791 + yjfI HEPCGN_10440 0.66 +1.0 829,999 + -0.7 830,080 + +0.5 830,080 + +0.5 830,181 + rlmB HEPCGN_10445 0.17 +0.4 830,182 - rlmB HEPCGN_10445 0.18 +1.2 830,182 - rlmB HEPCGN_10445 0.18 +0.6 830,237 + rlmB HEPCGN_10445 0.25 +1.0 830,244 + rlmB HEPCGN_10445 0.26 -0.4 830,244 + rlmB HEPCGN_10445 0.26 +1.0 830,245 - rlmB HEPCGN_10445 0.26 +1.2 830,298 + rlmB HEPCGN_10445 0.33 +1.1 830,299 - rlmB HEPCGN_10445 0.34 +1.5 830,547 - rlmB HEPCGN_10445 0.67 +0.1 830,686 - rlmB HEPCGN_10445 0.86 +1.3 830,686 - rlmB HEPCGN_10445 0.86 +0.6 830,686 - rlmB HEPCGN_10445 0.86 +0.6 830,789 - +1.6 830,791 - +1.0 830,836 - -0.4 830,871 - +0.1 830,871 - -0.1
Or see this region's nucleotide sequence