Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tamB and tamA overlap by 4 nucleotides tamA and msrA are separated by 205 nucleotides
HEPCGN_10195: tamB - autotransporter assembly complex protein TamB, at 782,724 to 786,503
tamB
HEPCGN_10200: tamA - autotransporter assembly complex protein TamA, at 786,500 to 788,233
tamA
HEPCGN_10205: msrA - Peptide methionine sulfoxide reductase MsrA, at 788,439 to 789,077
msrA
Position (kb) 786
787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 785.523 kb on + strand, within tamB at 785.524 kb on - strand, within tamB at 785.810 kb on + strand, within tamB at 786.225 kb on - strand at 786.228 kb on - strand at 786.362 kb on + strand at 786.395 kb on + strand at 786.396 kb on - strand at 786.399 kb on + strand at 786.525 kb on + strand at 786.526 kb on - strand at 786.526 kb on - strand at 786.533 kb on + strand at 786.711 kb on + strand, within tamA at 786.712 kb on - strand, within tamA at 786.712 kb on - strand, within tamA at 786.792 kb on + strand, within tamA at 786.849 kb on - strand, within tamA at 786.915 kb on + strand, within tamA at 786.916 kb on - strand, within tamA at 786.997 kb on + strand, within tamA at 787.003 kb on - strand, within tamA at 787.097 kb on - strand, within tamA at 787.192 kb on + strand, within tamA at 787.232 kb on - strand, within tamA at 787.251 kb on + strand, within tamA at 787.254 kb on + strand, within tamA at 787.254 kb on + strand, within tamA at 787.255 kb on - strand, within tamA at 787.288 kb on + strand, within tamA at 787.331 kb on - strand, within tamA at 787.353 kb on + strand, within tamA at 787.353 kb on + strand, within tamA at 787.354 kb on - strand, within tamA at 787.354 kb on - strand, within tamA at 787.354 kb on - strand, within tamA at 787.354 kb on - strand, within tamA at 787.476 kb on - strand, within tamA at 787.525 kb on + strand, within tamA at 787.581 kb on + strand, within tamA at 787.620 kb on + strand, within tamA at 787.620 kb on + strand, within tamA at 787.621 kb on - strand, within tamA at 787.621 kb on - strand, within tamA at 787.684 kb on + strand, within tamA at 787.708 kb on + strand, within tamA at 787.709 kb on - strand, within tamA at 787.787 kb on + strand, within tamA at 787.867 kb on - strand, within tamA at 787.919 kb on + strand, within tamA at 787.920 kb on - strand, within tamA at 787.956 kb on - strand, within tamA at 788.199 kb on - strand at 788.204 kb on + strand at 788.213 kb on + strand at 788.214 kb on - strand at 788.248 kb on - strand at 788.248 kb on - strand at 788.300 kb on + strand at 788.300 kb on + strand at 788.322 kb on + strand at 788.323 kb on - strand at 788.323 kb on - strand at 788.353 kb on - strand at 788.359 kb on - strand at 788.359 kb on - strand at 788.397 kb on - strand at 788.447 kb on - strand at 788.495 kb on + strand at 788.496 kb on - strand at 788.496 kb on - strand at 788.656 kb on - strand, within msrA at 788.669 kb on + strand, within msrA at 788.670 kb on - strand, within msrA at 788.685 kb on + strand, within msrA at 788.686 kb on - strand, within msrA at 788.780 kb on - strand, within msrA at 788.979 kb on + strand, within msrA at 788.979 kb on + strand, within msrA at 788.980 kb on - strand, within msrA at 788.980 kb on - strand, within msrA at 789.096 kb on - strand at 789.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 785,523 + tamB HEPCGN_10195 0.74 +1.4 785,524 - tamB HEPCGN_10195 0.74 +0.7 785,810 + tamB HEPCGN_10195 0.82 +1.0 786,225 - +0.4 786,228 - +1.2 786,362 + -0.0 786,395 + -0.6 786,396 - +0.4 786,399 + +0.6 786,525 + +1.5 786,526 - +2.4 786,526 - +2.3 786,533 + +1.0 786,711 + tamA HEPCGN_10200 0.12 +0.8 786,712 - tamA HEPCGN_10200 0.12 +0.1 786,712 - tamA HEPCGN_10200 0.12 +0.6 786,792 + tamA HEPCGN_10200 0.17 +0.7 786,849 - tamA HEPCGN_10200 0.20 +0.9 786,915 + tamA HEPCGN_10200 0.24 +1.0 786,916 - tamA HEPCGN_10200 0.24 +2.8 786,997 + tamA HEPCGN_10200 0.29 +0.5 787,003 - tamA HEPCGN_10200 0.29 -0.3 787,097 - tamA HEPCGN_10200 0.34 +0.7 787,192 + tamA HEPCGN_10200 0.40 -1.1 787,232 - tamA HEPCGN_10200 0.42 +0.2 787,251 + tamA HEPCGN_10200 0.43 +1.4 787,254 + tamA HEPCGN_10200 0.43 +0.8 787,254 + tamA HEPCGN_10200 0.43 +0.8 787,255 - tamA HEPCGN_10200 0.44 +0.8 787,288 + tamA HEPCGN_10200 0.45 +0.7 787,331 - tamA HEPCGN_10200 0.48 +1.7 787,353 + tamA HEPCGN_10200 0.49 +1.7 787,353 + tamA HEPCGN_10200 0.49 +0.8 787,354 - tamA HEPCGN_10200 0.49 -0.3 787,354 - tamA HEPCGN_10200 0.49 -0.0 787,354 - tamA HEPCGN_10200 0.49 +1.8 787,354 - tamA HEPCGN_10200 0.49 -0.3 787,476 - tamA HEPCGN_10200 0.56 +1.0 787,525 + tamA HEPCGN_10200 0.59 +0.6 787,581 + tamA HEPCGN_10200 0.62 +0.7 787,620 + tamA HEPCGN_10200 0.65 +0.5 787,620 + tamA HEPCGN_10200 0.65 +0.4 787,621 - tamA HEPCGN_10200 0.65 +1.1 787,621 - tamA HEPCGN_10200 0.65 +1.1 787,684 + tamA HEPCGN_10200 0.68 +1.0 787,708 + tamA HEPCGN_10200 0.70 -0.3 787,709 - tamA HEPCGN_10200 0.70 +0.4 787,787 + tamA HEPCGN_10200 0.74 -0.0 787,867 - tamA HEPCGN_10200 0.79 +1.2 787,919 + tamA HEPCGN_10200 0.82 +0.3 787,920 - tamA HEPCGN_10200 0.82 +1.0 787,956 - tamA HEPCGN_10200 0.84 +1.0 788,199 - +1.4 788,204 + +0.9 788,213 + +0.7 788,214 - +0.5 788,248 - +0.4 788,248 - +0.8 788,300 + -1.1 788,300 + -0.4 788,322 + +0.1 788,323 - -3.6 788,323 - -0.8 788,353 - +0.1 788,359 - +1.4 788,359 - -0.8 788,397 - -1.4 788,447 - +0.6 788,495 + -0.0 788,496 - -1.3 788,496 - +0.6 788,656 - msrA HEPCGN_10205 0.34 +0.1 788,669 + msrA HEPCGN_10205 0.36 -0.1 788,670 - msrA HEPCGN_10205 0.36 -0.1 788,685 + msrA HEPCGN_10205 0.38 -0.4 788,686 - msrA HEPCGN_10205 0.39 -0.6 788,780 - msrA HEPCGN_10205 0.53 -0.7 788,979 + msrA HEPCGN_10205 0.85 +0.4 788,979 + msrA HEPCGN_10205 0.85 +0.2 788,980 - msrA HEPCGN_10205 0.85 +0.1 788,980 - msrA HEPCGN_10205 0.85 +0.6 789,096 - -0.1 789,107 - +0.1
Or see this region's nucleotide sequence