Strain Fitness in Escherichia coli ECOR38 around HEPCGN_09655

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_09650 and HEPCGN_09655 are separated by 169 nucleotidesHEPCGN_09655 and HEPCGN_09660 are separated by 6 nucleotides HEPCGN_09650: HEPCGN_09650 - HNH endonuclease, at 671,420 to 672,292 _09650 HEPCGN_09655: HEPCGN_09655 - Restriction endonuclease, at 672,462 to 673,445 _09655 HEPCGN_09660: HEPCGN_09660 - AAA family ATPase, at 673,452 to 674,537 _09660 Position (kb) 672 673 674Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 671.517 kb on - strand, within HEPCGN_09650at 671.517 kb on - strand, within HEPCGN_09650at 671.520 kb on + strand, within HEPCGN_09650at 671.520 kb on + strand, within HEPCGN_09650at 671.520 kb on + strand, within HEPCGN_09650at 671.521 kb on - strand, within HEPCGN_09650at 671.521 kb on - strand, within HEPCGN_09650at 671.576 kb on + strand, within HEPCGN_09650at 671.577 kb on - strand, within HEPCGN_09650at 671.780 kb on + strand, within HEPCGN_09650at 671.780 kb on + strand, within HEPCGN_09650at 671.780 kb on + strand, within HEPCGN_09650at 671.781 kb on - strand, within HEPCGN_09650at 671.816 kb on - strand, within HEPCGN_09650at 671.833 kb on - strand, within HEPCGN_09650at 671.957 kb on + strand, within HEPCGN_09650at 671.981 kb on - strand, within HEPCGN_09650at 671.984 kb on - strand, within HEPCGN_09650at 672.027 kb on + strand, within HEPCGN_09650at 672.240 kb on - strandat 672.367 kb on - strandat 672.421 kb on - strandat 672.436 kb on - strandat 672.436 kb on - strandat 672.472 kb on + strandat 672.472 kb on + strandat 672.472 kb on + strandat 672.472 kb on + strandat 672.472 kb on + strandat 672.473 kb on - strandat 672.674 kb on + strand, within HEPCGN_09655at 672.675 kb on - strand, within HEPCGN_09655at 672.705 kb on + strand, within HEPCGN_09655at 672.781 kb on - strand, within HEPCGN_09655at 672.830 kb on + strand, within HEPCGN_09655at 672.831 kb on - strand, within HEPCGN_09655at 672.831 kb on - strand, within HEPCGN_09655at 672.831 kb on - strand, within HEPCGN_09655at 672.831 kb on - strand, within HEPCGN_09655at 672.882 kb on + strand, within HEPCGN_09655at 673.006 kb on + strand, within HEPCGN_09655at 673.038 kb on + strand, within HEPCGN_09655at 673.039 kb on - strand, within HEPCGN_09655at 673.039 kb on - strand, within HEPCGN_09655at 673.039 kb on - strand, within HEPCGN_09655at 673.039 kb on - strand, within HEPCGN_09655at 673.065 kb on + strand, within HEPCGN_09655at 673.066 kb on - strand, within HEPCGN_09655at 673.111 kb on + strand, within HEPCGN_09655at 673.115 kb on + strand, within HEPCGN_09655at 673.121 kb on + strand, within HEPCGN_09655at 673.121 kb on + strand, within HEPCGN_09655at 673.122 kb on - strand, within HEPCGN_09655at 673.122 kb on - strand, within HEPCGN_09655at 673.122 kb on - strand, within HEPCGN_09655at 673.122 kb on - strand, within HEPCGN_09655at 673.165 kb on + strand, within HEPCGN_09655at 673.166 kb on - strand, within HEPCGN_09655at 673.178 kb on + strand, within HEPCGN_09655at 673.322 kb on + strand, within HEPCGN_09655at 673.324 kb on + strand, within HEPCGN_09655at 673.382 kb on + strandat 673.383 kb on - strandat 673.383 kb on - strandat 673.383 kb on - strandat 673.383 kb on - strandat 673.405 kb on + strandat 673.405 kb on + strandat 673.408 kb on + strandat 673.430 kb on - strandat 673.437 kb on - strandat 673.461 kb on + strandat 673.464 kb on - strandat 673.492 kb on - strandat 673.494 kb on - strandat 673.517 kb on - strandat 673.593 kb on + strand, within HEPCGN_09660at 673.652 kb on + strand, within HEPCGN_09660at 673.675 kb on - strand, within HEPCGN_09660at 673.731 kb on + strand, within HEPCGN_09660at 673.754 kb on + strand, within HEPCGN_09660at 673.855 kb on + strand, within HEPCGN_09660at 673.873 kb on + strand, within HEPCGN_09660at 673.923 kb on - strand, within HEPCGN_09660at 673.959 kb on - strand, within HEPCGN_09660at 673.976 kb on + strand, within HEPCGN_09660at 673.993 kb on + strand, within HEPCGN_09660at 673.994 kb on - strand, within HEPCGN_09660at 674.060 kb on - strand, within HEPCGN_09660at 674.104 kb on + strand, within HEPCGN_09660at 674.105 kb on - strand, within HEPCGN_09660at 674.150 kb on + strand, within HEPCGN_09660at 674.150 kb on + strand, within HEPCGN_09660at 674.151 kb on - strand, within HEPCGN_09660at 674.172 kb on - strand, within HEPCGN_09660at 674.263 kb on + strand, within HEPCGN_09660at 674.264 kb on - strand, within HEPCGN_09660

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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671,517 - HEPCGN_09650 0.11 +0.0
671,517 - HEPCGN_09650 0.11 -2.9
671,520 + HEPCGN_09650 0.11 +0.6
671,520 + HEPCGN_09650 0.11 -0.3
671,520 + HEPCGN_09650 0.11 +0.3
671,521 - HEPCGN_09650 0.12 -1.5
671,521 - HEPCGN_09650 0.12 -0.2
671,576 + HEPCGN_09650 0.18 -0.9
671,577 - HEPCGN_09650 0.18 -1.1
671,780 + HEPCGN_09650 0.41 +0.3
671,780 + HEPCGN_09650 0.41 -1.1
671,780 + HEPCGN_09650 0.41 +0.4
671,781 - HEPCGN_09650 0.41 -0.9
671,816 - HEPCGN_09650 0.45 +0.0
671,833 - HEPCGN_09650 0.47 -0.2
671,957 + HEPCGN_09650 0.62 -0.5
671,981 - HEPCGN_09650 0.64 +1.9
671,984 - HEPCGN_09650 0.65 +0.0
672,027 + HEPCGN_09650 0.70 -0.6
672,240 - -0.6
672,367 - +0.5
672,421 - +0.7
672,436 - +0.5
672,436 - +0.4
672,472 + -0.4
672,472 + +0.3
672,472 + +0.1
672,472 + -0.5
672,472 + +1.2
672,473 - -0.9
672,674 + HEPCGN_09655 0.22 -0.6
672,675 - HEPCGN_09655 0.22 -0.6
672,705 + HEPCGN_09655 0.25 +0.6
672,781 - HEPCGN_09655 0.32 -1.1
672,830 + HEPCGN_09655 0.37 -0.3
672,831 - HEPCGN_09655 0.38 +0.4
672,831 - HEPCGN_09655 0.38 -0.5
672,831 - HEPCGN_09655 0.38 +0.7
672,831 - HEPCGN_09655 0.38 -0.4
672,882 + HEPCGN_09655 0.43 +0.5
673,006 + HEPCGN_09655 0.55 -0.6
673,038 + HEPCGN_09655 0.59 +2.1
673,039 - HEPCGN_09655 0.59 -2.4
673,039 - HEPCGN_09655 0.59 -1.2
673,039 - HEPCGN_09655 0.59 -0.5
673,039 - HEPCGN_09655 0.59 +0.2
673,065 + HEPCGN_09655 0.61 -1.7
673,066 - HEPCGN_09655 0.61 -1.2
673,111 + HEPCGN_09655 0.66 -1.1
673,115 + HEPCGN_09655 0.66 -0.9
673,121 + HEPCGN_09655 0.67 -0.8
673,121 + HEPCGN_09655 0.67 -2.0
673,122 - HEPCGN_09655 0.67 +0.8
673,122 - HEPCGN_09655 0.67 +0.7
673,122 - HEPCGN_09655 0.67 -0.5
673,122 - HEPCGN_09655 0.67 +0.5
673,165 + HEPCGN_09655 0.71 -0.6
673,166 - HEPCGN_09655 0.72 +0.1
673,178 + HEPCGN_09655 0.73 -0.6
673,322 + HEPCGN_09655 0.87 +0.9
673,324 + HEPCGN_09655 0.88 +0.4
673,382 + -1.0
673,383 - -0.6
673,383 - +0.5
673,383 - -0.6
673,383 - -0.1
673,405 + -0.1
673,405 + -0.7
673,408 + -0.7
673,430 - +3.6
673,437 - +0.8
673,461 + +0.1
673,464 - +0.5
673,492 - +0.8
673,494 - -0.1
673,517 - +0.1
673,593 + HEPCGN_09660 0.13 -0.1
673,652 + HEPCGN_09660 0.18 +1.0
673,675 - HEPCGN_09660 0.21 -0.6
673,731 + HEPCGN_09660 0.26 +1.0
673,754 + HEPCGN_09660 0.28 +0.1
673,855 + HEPCGN_09660 0.37 +0.1
673,873 + HEPCGN_09660 0.39 -0.4
673,923 - HEPCGN_09660 0.43 +1.4
673,959 - HEPCGN_09660 0.47 -0.8
673,976 + HEPCGN_09660 0.48 +0.4
673,993 + HEPCGN_09660 0.50 +0.2
673,994 - HEPCGN_09660 0.50 -0.4
674,060 - HEPCGN_09660 0.56 +0.2
674,104 + HEPCGN_09660 0.60 -1.8
674,105 - HEPCGN_09660 0.60 -1.3
674,150 + HEPCGN_09660 0.64 -2.0
674,150 + HEPCGN_09660 0.64 -0.5
674,151 - HEPCGN_09660 0.64 -0.5
674,172 - HEPCGN_09660 0.66 -2.0
674,263 + HEPCGN_09660 0.75 -0.4
674,264 - HEPCGN_09660 0.75 +1.4

Or see this region's nucleotide sequence