Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt radA and serB are separated by 48 nucleotides serB and ahpA are separated by 105 nucleotides ahpA and lplA are separated by 27 nucleotides
HEPCGN_09195: radA - DNA repair protein RadA, at 586,897 to 588,279
radA
HEPCGN_09200: serB - phosphoserine phosphatase, at 588,328 to 589,296
serB
HEPCGN_09205: ahpA - YtjB family periplasmic protein, at 589,402 to 590,046
ahpA
HEPCGN_09210: lplA - lipoate--protein ligase LplA, at 590,074 to 591,090
lplA
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2 at 587.388 kb on + strand, within radA at 587.439 kb on + strand, within radA at 587.617 kb on + strand, within radA at 587.672 kb on + strand, within radA at 587.673 kb on - strand, within radA at 587.719 kb on + strand, within radA at 587.719 kb on + strand, within radA at 587.720 kb on - strand, within radA at 587.823 kb on + strand, within radA at 587.824 kb on - strand, within radA at 587.824 kb on - strand, within radA at 587.900 kb on + strand, within radA at 587.901 kb on - strand, within radA at 587.901 kb on - strand, within radA at 587.902 kb on + strand, within radA at 587.903 kb on - strand, within radA at 587.903 kb on - strand, within radA at 587.903 kb on - strand, within radA at 588.017 kb on - strand, within radA at 588.285 kb on - strand at 588.329 kb on + strand at 588.329 kb on + strand at 588.329 kb on + strand at 588.626 kb on - strand, within serB at 588.660 kb on - strand, within serB at 588.728 kb on - strand, within serB at 588.739 kb on + strand, within serB at 588.918 kb on + strand, within serB at 588.919 kb on - strand, within serB at 589.076 kb on + strand, within serB at 589.110 kb on + strand, within serB at 589.133 kb on + strand, within serB at 589.169 kb on + strand, within serB at 589.169 kb on + strand, within serB at 589.200 kb on - strand at 589.333 kb on - strand at 589.346 kb on - strand at 589.353 kb on - strand at 589.353 kb on - strand at 589.353 kb on - strand at 589.353 kb on - strand at 589.374 kb on + strand at 589.374 kb on + strand at 589.375 kb on - strand at 589.375 kb on - strand at 589.375 kb on - strand at 589.375 kb on - strand at 589.524 kb on + strand, within ahpA at 589.769 kb on - strand, within ahpA at 589.774 kb on - strand, within ahpA at 589.774 kb on - strand, within ahpA at 589.849 kb on - strand, within ahpA at 589.849 kb on - strand, within ahpA at 589.887 kb on + strand, within ahpA at 589.888 kb on - strand, within ahpA at 589.895 kb on + strand, within ahpA at 589.895 kb on + strand, within ahpA at 590.052 kb on + strand at 590.052 kb on + strand at 590.052 kb on + strand at 590.053 kb on - strand at 590.055 kb on + strand at 590.056 kb on - strand at 590.084 kb on + strand at 590.085 kb on - strand at 590.085 kb on - strand at 590.143 kb on - strand at 590.241 kb on + strand, within lplA at 590.241 kb on + strand, within lplA at 590.265 kb on + strand, within lplA at 590.265 kb on + strand, within lplA
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 587,388 + radA HEPCGN_09195 0.36 +0.2 587,439 + radA HEPCGN_09195 0.39 -0.6 587,617 + radA HEPCGN_09195 0.52 +0.2 587,672 + radA HEPCGN_09195 0.56 +0.4 587,673 - radA HEPCGN_09195 0.56 +1.7 587,719 + radA HEPCGN_09195 0.59 -0.1 587,719 + radA HEPCGN_09195 0.59 -0.8 587,720 - radA HEPCGN_09195 0.60 -0.3 587,823 + radA HEPCGN_09195 0.67 -0.7 587,824 - radA HEPCGN_09195 0.67 -0.5 587,824 - radA HEPCGN_09195 0.67 -0.2 587,900 + radA HEPCGN_09195 0.73 +0.7 587,901 - radA HEPCGN_09195 0.73 +0.5 587,901 - radA HEPCGN_09195 0.73 -2.1 587,902 + radA HEPCGN_09195 0.73 -0.6 587,903 - radA HEPCGN_09195 0.73 +1.8 587,903 - radA HEPCGN_09195 0.73 -0.1 587,903 - radA HEPCGN_09195 0.73 -1.5 588,017 - radA HEPCGN_09195 0.81 +0.4 588,285 - -1.6 588,329 + -0.4 588,329 + -0.2 588,329 + -0.7 588,626 - serB HEPCGN_09200 0.31 -0.6 588,660 - serB HEPCGN_09200 0.34 +0.3 588,728 - serB HEPCGN_09200 0.41 +0.6 588,739 + serB HEPCGN_09200 0.42 -0.4 588,918 + serB HEPCGN_09200 0.61 -0.1 588,919 - serB HEPCGN_09200 0.61 +0.3 589,076 + serB HEPCGN_09200 0.77 -0.4 589,110 + serB HEPCGN_09200 0.81 +1.1 589,133 + serB HEPCGN_09200 0.83 +0.2 589,169 + serB HEPCGN_09200 0.87 +0.3 589,169 + serB HEPCGN_09200 0.87 -0.2 589,200 - -1.2 589,333 - -1.1 589,346 - +0.5 589,353 - -0.2 589,353 - -0.4 589,353 - -0.1 589,353 - -0.2 589,374 + +0.2 589,374 + +0.8 589,375 - +0.1 589,375 - -1.0 589,375 - -1.2 589,375 - -1.0 589,524 + ahpA HEPCGN_09205 0.19 -1.2 589,769 - ahpA HEPCGN_09205 0.57 +0.9 589,774 - ahpA HEPCGN_09205 0.58 +0.8 589,774 - ahpA HEPCGN_09205 0.58 -1.5 589,849 - ahpA HEPCGN_09205 0.69 -1.1 589,849 - ahpA HEPCGN_09205 0.69 -1.3 589,887 + ahpA HEPCGN_09205 0.75 -0.5 589,888 - ahpA HEPCGN_09205 0.75 -0.9 589,895 + ahpA HEPCGN_09205 0.76 -1.0 589,895 + ahpA HEPCGN_09205 0.76 -1.2 590,052 + -0.9 590,052 + +0.0 590,052 + +0.9 590,053 - -1.4 590,055 + +0.5 590,056 - -2.2 590,084 + +0.8 590,085 - +2.1 590,085 - +0.5 590,143 - +0.0 590,241 + lplA HEPCGN_09210 0.16 +0.2 590,241 + lplA HEPCGN_09210 0.16 -0.2 590,265 + lplA HEPCGN_09210 0.19 +0.8 590,265 + lplA HEPCGN_09210 0.19 +1.0
Or see this region's nucleotide sequence