Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ettA and HEPCGN_09185 are separated by 55 nucleotides HEPCGN_09185 and nadR are separated by 33 nucleotides
HEPCGN_09180: ettA - energy-dependent translational throttle protein EttA, at 583,603 to 585,270
ettA
HEPCGN_09185: HEPCGN_09185 - transcriptional regulator, at 585,326 to 585,610
_09185
HEPCGN_09190: nadR - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 585,644 to 586,876
nadR
Position (kb) 585
586 Strain fitness (log2 ratio) -1
0
1
2
3 at 584.328 kb on + strand, within ettA at 584.328 kb on + strand, within ettA at 584.329 kb on - strand, within ettA at 584.329 kb on - strand, within ettA at 584.332 kb on + strand, within ettA at 584.333 kb on - strand, within ettA at 584.400 kb on + strand, within ettA at 584.401 kb on - strand, within ettA at 584.442 kb on + strand, within ettA at 584.464 kb on - strand, within ettA at 584.464 kb on - strand, within ettA at 584.686 kb on - strand, within ettA at 584.703 kb on + strand, within ettA at 584.895 kb on + strand, within ettA at 584.895 kb on + strand, within ettA at 585.091 kb on - strand, within ettA at 585.142 kb on + strand at 585.250 kb on + strand at 585.258 kb on + strand at 585.268 kb on + strand at 585.268 kb on + strand at 585.269 kb on - strand at 585.269 kb on - strand at 585.269 kb on - strand at 585.315 kb on + strand at 585.316 kb on - strand at 585.316 kb on - strand at 585.368 kb on - strand, within HEPCGN_09185 at 585.380 kb on + strand, within HEPCGN_09185 at 585.381 kb on - strand, within HEPCGN_09185 at 585.381 kb on - strand, within HEPCGN_09185 at 585.436 kb on + strand, within HEPCGN_09185 at 585.441 kb on - strand, within HEPCGN_09185 at 585.441 kb on - strand, within HEPCGN_09185 at 585.500 kb on - strand, within HEPCGN_09185 at 585.548 kb on + strand, within HEPCGN_09185 at 585.705 kb on + strand at 585.706 kb on - strand at 585.810 kb on - strand, within nadR at 585.810 kb on - strand, within nadR at 585.912 kb on + strand, within nadR at 586.077 kb on + strand, within nadR at 586.118 kb on - strand, within nadR at 586.118 kb on - strand, within nadR at 586.118 kb on - strand, within nadR at 586.120 kb on + strand, within nadR at 586.121 kb on - strand, within nadR at 586.134 kb on - strand, within nadR at 586.215 kb on + strand, within nadR at 586.215 kb on + strand, within nadR at 586.216 kb on - strand, within nadR at 586.267 kb on + strand, within nadR at 586.268 kb on - strand, within nadR at 586.318 kb on + strand, within nadR at 586.318 kb on + strand, within nadR at 586.319 kb on - strand, within nadR at 586.320 kb on + strand, within nadR at 586.321 kb on - strand, within nadR at 586.321 kb on - strand, within nadR at 586.321 kb on - strand, within nadR at 586.350 kb on + strand, within nadR at 586.493 kb on + strand, within nadR at 586.591 kb on + strand, within nadR at 586.591 kb on + strand, within nadR at 586.592 kb on - strand, within nadR at 586.592 kb on - strand, within nadR
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 584,328 + ettA HEPCGN_09180 0.43 +0.6 584,328 + ettA HEPCGN_09180 0.43 +0.9 584,329 - ettA HEPCGN_09180 0.44 +0.7 584,329 - ettA HEPCGN_09180 0.44 +1.3 584,332 + ettA HEPCGN_09180 0.44 +0.6 584,333 - ettA HEPCGN_09180 0.44 +1.1 584,400 + ettA HEPCGN_09180 0.48 -0.5 584,401 - ettA HEPCGN_09180 0.48 +1.3 584,442 + ettA HEPCGN_09180 0.50 +1.1 584,464 - ettA HEPCGN_09180 0.52 +0.0 584,464 - ettA HEPCGN_09180 0.52 +0.7 584,686 - ettA HEPCGN_09180 0.65 -1.5 584,703 + ettA HEPCGN_09180 0.66 -0.2 584,895 + ettA HEPCGN_09180 0.77 +0.3 584,895 + ettA HEPCGN_09180 0.77 +0.4 585,091 - ettA HEPCGN_09180 0.89 +0.1 585,142 + +1.5 585,250 + +1.0 585,258 + +0.7 585,268 + +1.1 585,268 + -0.2 585,269 - +1.6 585,269 - +1.4 585,269 - +0.4 585,315 + +0.6 585,316 - +2.9 585,316 - +0.1 585,368 - HEPCGN_09185 0.15 +1.6 585,380 + HEPCGN_09185 0.19 +1.0 585,381 - HEPCGN_09185 0.19 +1.0 585,381 - HEPCGN_09185 0.19 -0.5 585,436 + HEPCGN_09185 0.39 +0.1 585,441 - HEPCGN_09185 0.40 +0.3 585,441 - HEPCGN_09185 0.40 -0.5 585,500 - HEPCGN_09185 0.61 +1.3 585,548 + HEPCGN_09185 0.78 +0.3 585,705 + +0.2 585,706 - -1.3 585,810 - nadR HEPCGN_09190 0.13 +0.6 585,810 - nadR HEPCGN_09190 0.13 -1.5 585,912 + nadR HEPCGN_09190 0.22 -0.1 586,077 + nadR HEPCGN_09190 0.35 -1.0 586,118 - nadR HEPCGN_09190 0.38 -0.5 586,118 - nadR HEPCGN_09190 0.38 -0.0 586,118 - nadR HEPCGN_09190 0.38 -0.7 586,120 + nadR HEPCGN_09190 0.39 +0.1 586,121 - nadR HEPCGN_09190 0.39 +0.8 586,134 - nadR HEPCGN_09190 0.40 -0.3 586,215 + nadR HEPCGN_09190 0.46 +0.0 586,215 + nadR HEPCGN_09190 0.46 +0.0 586,216 - nadR HEPCGN_09190 0.46 +0.2 586,267 + nadR HEPCGN_09190 0.51 +0.1 586,268 - nadR HEPCGN_09190 0.51 +0.8 586,318 + nadR HEPCGN_09190 0.55 -0.4 586,318 + nadR HEPCGN_09190 0.55 +0.9 586,319 - nadR HEPCGN_09190 0.55 +0.4 586,320 + nadR HEPCGN_09190 0.55 -0.1 586,321 - nadR HEPCGN_09190 0.55 -0.1 586,321 - nadR HEPCGN_09190 0.55 +1.0 586,321 - nadR HEPCGN_09190 0.55 +0.0 586,350 + nadR HEPCGN_09190 0.57 +1.0 586,493 + nadR HEPCGN_09190 0.69 -1.4 586,591 + nadR HEPCGN_09190 0.77 -0.5 586,591 + nadR HEPCGN_09190 0.77 -1.5 586,592 - nadR HEPCGN_09190 0.77 +0.8 586,592 - nadR HEPCGN_09190 0.77 -0.8
Or see this region's nucleotide sequence