Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06750

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgsk and aes are separated by 151 nucleotidesaes and hemH overlap by 4 nucleotides HEPCGN_06745: gsk - inosine/guanosine kinase, at 81,867 to 83,171 gsk HEPCGN_06750: aes - acetyl esterase, at 83,323 to 84,282 aes HEPCGN_06755: hemH - ferrochelatase, at 84,279 to 85,241 hemH Position (kb) 83 84 85Strain fitness (log2 ratio) -1 0 1 2 3at 82.366 kb on - strand, within gskat 82.424 kb on + strand, within gskat 82.510 kb on - strand, within gskat 82.515 kb on - strand, within gskat 82.517 kb on - strand, within gskat 82.517 kb on - strand, within gskat 82.588 kb on + strand, within gskat 82.589 kb on - strand, within gskat 82.713 kb on - strand, within gskat 82.746 kb on + strand, within gskat 82.747 kb on - strand, within gskat 82.747 kb on - strand, within gskat 82.747 kb on - strand, within gskat 82.747 kb on - strand, within gskat 82.747 kb on - strand, within gskat 82.754 kb on + strand, within gskat 82.755 kb on - strand, within gskat 82.755 kb on - strand, within gskat 82.776 kb on - strand, within gskat 82.778 kb on + strand, within gskat 82.778 kb on + strand, within gskat 82.778 kb on + strand, within gskat 82.778 kb on + strand, within gskat 82.779 kb on - strand, within gskat 82.798 kb on + strand, within gskat 82.798 kb on + strand, within gskat 82.798 kb on + strand, within gskat 82.798 kb on + strand, within gskat 82.798 kb on + strand, within gskat 82.798 kb on + strand, within gskat 82.799 kb on - strand, within gskat 82.821 kb on - strand, within gskat 82.867 kb on + strand, within gskat 82.868 kb on - strand, within gskat 82.914 kb on - strand, within gskat 83.137 kb on + strandat 83.138 kb on - strandat 83.138 kb on - strandat 83.138 kb on - strandat 83.150 kb on + strandat 83.292 kb on + strandat 83.293 kb on - strandat 83.359 kb on - strandat 83.450 kb on - strand, within aesat 83.450 kb on - strand, within aesat 83.452 kb on + strand, within aesat 83.452 kb on + strand, within aesat 83.509 kb on + strand, within aesat 83.509 kb on + strand, within aesat 83.510 kb on - strand, within aesat 83.510 kb on - strand, within aesat 83.510 kb on - strand, within aesat 83.588 kb on - strand, within aesat 83.660 kb on - strand, within aesat 83.670 kb on + strand, within aesat 83.671 kb on - strand, within aesat 83.671 kb on - strand, within aesat 83.690 kb on - strand, within aesat 83.690 kb on - strand, within aesat 83.752 kb on + strand, within aesat 83.787 kb on + strand, within aesat 83.992 kb on + strand, within aesat 83.993 kb on - strand, within aesat 83.993 kb on - strand, within aesat 84.004 kb on + strand, within aesat 84.005 kb on - strand, within aesat 84.005 kb on - strand, within aesat 84.005 kb on - strand, within aesat 84.008 kb on + strand, within aesat 84.008 kb on + strand, within aesat 84.052 kb on - strand, within aesat 84.088 kb on - strand, within aesat 84.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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82,366 - gsk HEPCGN_06745 0.38 +1.1
82,424 + gsk HEPCGN_06745 0.43 -1.5
82,510 - gsk HEPCGN_06745 0.49 +1.0
82,515 - gsk HEPCGN_06745 0.50 +1.0
82,517 - gsk HEPCGN_06745 0.50 -1.2
82,517 - gsk HEPCGN_06745 0.50 -0.1
82,588 + gsk HEPCGN_06745 0.55 +0.2
82,589 - gsk HEPCGN_06745 0.55 +0.2
82,713 - gsk HEPCGN_06745 0.65 +0.0
82,746 + gsk HEPCGN_06745 0.67 -0.6
82,747 - gsk HEPCGN_06745 0.67 +0.6
82,747 - gsk HEPCGN_06745 0.67 -1.0
82,747 - gsk HEPCGN_06745 0.67 +1.3
82,747 - gsk HEPCGN_06745 0.67 +0.2
82,747 - gsk HEPCGN_06745 0.67 +1.2
82,754 + gsk HEPCGN_06745 0.68 +0.4
82,755 - gsk HEPCGN_06745 0.68 +2.2
82,755 - gsk HEPCGN_06745 0.68 -1.7
82,776 - gsk HEPCGN_06745 0.70 +1.4
82,778 + gsk HEPCGN_06745 0.70 +0.0
82,778 + gsk HEPCGN_06745 0.70 +0.7
82,778 + gsk HEPCGN_06745 0.70 +0.0
82,778 + gsk HEPCGN_06745 0.70 +0.8
82,779 - gsk HEPCGN_06745 0.70 +0.6
82,798 + gsk HEPCGN_06745 0.71 +1.1
82,798 + gsk HEPCGN_06745 0.71 +0.8
82,798 + gsk HEPCGN_06745 0.71 +0.4
82,798 + gsk HEPCGN_06745 0.71 -0.1
82,798 + gsk HEPCGN_06745 0.71 +2.8
82,798 + gsk HEPCGN_06745 0.71 -0.4
82,799 - gsk HEPCGN_06745 0.71 +0.1
82,821 - gsk HEPCGN_06745 0.73 -0.3
82,867 + gsk HEPCGN_06745 0.77 +0.9
82,868 - gsk HEPCGN_06745 0.77 +0.6
82,914 - gsk HEPCGN_06745 0.80 +1.4
83,137 + +0.9
83,138 - -1.6
83,138 - +0.9
83,138 - +0.7
83,150 + +0.6
83,292 + +1.2
83,293 - -0.1
83,359 - +0.6
83,450 - aes HEPCGN_06750 0.13 +0.1
83,450 - aes HEPCGN_06750 0.13 +0.9
83,452 + aes HEPCGN_06750 0.13 -0.9
83,452 + aes HEPCGN_06750 0.13 +0.8
83,509 + aes HEPCGN_06750 0.19 -0.7
83,509 + aes HEPCGN_06750 0.19 +0.8
83,510 - aes HEPCGN_06750 0.19 +0.0
83,510 - aes HEPCGN_06750 0.19 +0.3
83,510 - aes HEPCGN_06750 0.19 +0.3
83,588 - aes HEPCGN_06750 0.28 -1.7
83,660 - aes HEPCGN_06750 0.35 +0.6
83,670 + aes HEPCGN_06750 0.36 -0.6
83,671 - aes HEPCGN_06750 0.36 -0.0
83,671 - aes HEPCGN_06750 0.36 -0.5
83,690 - aes HEPCGN_06750 0.38 +0.9
83,690 - aes HEPCGN_06750 0.38 +2.4
83,752 + aes HEPCGN_06750 0.45 +0.6
83,787 + aes HEPCGN_06750 0.48 +0.4
83,992 + aes HEPCGN_06750 0.70 +0.2
83,993 - aes HEPCGN_06750 0.70 -1.6
83,993 - aes HEPCGN_06750 0.70 +2.2
84,004 + aes HEPCGN_06750 0.71 +0.9
84,005 - aes HEPCGN_06750 0.71 -0.5
84,005 - aes HEPCGN_06750 0.71 -1.0
84,005 - aes HEPCGN_06750 0.71 +0.5
84,008 + aes HEPCGN_06750 0.71 +3.5
84,008 + aes HEPCGN_06750 0.71 -1.7
84,052 - aes HEPCGN_06750 0.76 -0.2
84,088 - aes HEPCGN_06750 0.80 -1.2
84,302 + +0.3

Or see this region's nucleotide sequence