Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt clcB and HEPCGN_06130 are separated by 39 nucleotides HEPCGN_06130 and dmsD are separated by 193 nucleotides dmsD and ynfH are separated by 42 nucleotides ynfH and dmsB are separated by 1 nucleotides
HEPCGN_06125: clcB - voltage-gated ClC-type chloride channel ClcB, at 1,099,981 to 1,100,772
clcB
HEPCGN_06130: HEPCGN_06130 - Putative voltage-gated ClC-type chloride channel ClcB, at 1,100,812 to 1,101,237
_06130
HEPCGN_06135: dmsD - Tat proofreading chaperone DmsD, at 1,101,431 to 1,102,045
dmsD
HEPCGN_06140: ynfH - Anaerobic dimethyl sulfoxide reductase chain YnfH, at 1,102,088 to 1,102,942
ynfH
HEPCGN_06145: dmsB - dimethylsulfoxide reductase subunit B, at 1,102,944 to 1,103,540
dmsB
Position (kb) 1101
1102
1103 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1100.489 kb on - strand, within clcB at 1100.522 kb on - strand, within clcB at 1100.559 kb on + strand, within clcB at 1100.560 kb on - strand, within clcB at 1100.576 kb on + strand, within clcB at 1100.608 kb on + strand, within clcB at 1100.609 kb on - strand, within clcB at 1100.609 kb on - strand, within clcB at 1100.615 kb on + strand, within clcB at 1100.735 kb on - strand at 1100.735 kb on - strand at 1100.860 kb on + strand, within HEPCGN_06130 at 1100.908 kb on + strand, within HEPCGN_06130 at 1100.985 kb on - strand, within HEPCGN_06130 at 1100.985 kb on - strand, within HEPCGN_06130 at 1101.237 kb on + strand at 1101.237 kb on + strand at 1101.255 kb on - strand at 1101.262 kb on + strand at 1101.262 kb on + strand at 1101.262 kb on + strand at 1101.263 kb on - strand at 1101.263 kb on - strand at 1101.419 kb on - strand at 1101.494 kb on + strand, within dmsD at 1101.978 kb on + strand, within dmsD at 1102.049 kb on + strand at 1102.172 kb on + strand at 1102.173 kb on - strand at 1102.238 kb on + strand, within ynfH at 1102.250 kb on + strand, within ynfH at 1102.256 kb on + strand, within ynfH at 1102.256 kb on + strand, within ynfH at 1102.292 kb on + strand, within ynfH at 1102.292 kb on + strand, within ynfH at 1102.313 kb on + strand, within ynfH at 1102.314 kb on - strand, within ynfH at 1102.415 kb on - strand, within ynfH at 1102.415 kb on - strand, within ynfH at 1102.415 kb on - strand, within ynfH at 1102.455 kb on - strand, within ynfH at 1102.472 kb on + strand, within ynfH at 1102.473 kb on - strand, within ynfH at 1102.473 kb on - strand, within ynfH at 1102.495 kb on + strand, within ynfH at 1102.500 kb on + strand, within ynfH at 1102.647 kb on - strand, within ynfH at 1102.817 kb on - strand, within ynfH at 1102.880 kb on + strand at 1102.884 kb on - strand at 1102.884 kb on - strand at 1102.945 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 1,100,489 - clcB HEPCGN_06125 0.64 -0.0 1,100,522 - clcB HEPCGN_06125 0.68 +1.8 1,100,559 + clcB HEPCGN_06125 0.73 -0.3 1,100,560 - clcB HEPCGN_06125 0.73 -0.3 1,100,576 + clcB HEPCGN_06125 0.75 +2.2 1,100,608 + clcB HEPCGN_06125 0.79 +0.5 1,100,609 - clcB HEPCGN_06125 0.79 -0.0 1,100,609 - clcB HEPCGN_06125 0.79 -1.8 1,100,615 + clcB HEPCGN_06125 0.80 +3.4 1,100,735 - +1.1 1,100,735 - +0.0 1,100,860 + HEPCGN_06130 0.11 -0.4 1,100,908 + HEPCGN_06130 0.23 +0.0 1,100,985 - HEPCGN_06130 0.41 -0.9 1,100,985 - HEPCGN_06130 0.41 +0.6 1,101,237 + +0.2 1,101,237 + +1.2 1,101,255 - -0.6 1,101,262 + -0.3 1,101,262 + -1.5 1,101,262 + +0.5 1,101,263 - +1.0 1,101,263 - +1.1 1,101,419 - -0.5 1,101,494 + dmsD HEPCGN_06135 0.10 -0.2 1,101,978 + dmsD HEPCGN_06135 0.89 -0.6 1,102,049 + +0.2 1,102,172 + -2.3 1,102,173 - +0.1 1,102,238 + ynfH HEPCGN_06140 0.18 -0.3 1,102,250 + ynfH HEPCGN_06140 0.19 +0.5 1,102,256 + ynfH HEPCGN_06140 0.20 -0.4 1,102,256 + ynfH HEPCGN_06140 0.20 -0.1 1,102,292 + ynfH HEPCGN_06140 0.24 -0.3 1,102,292 + ynfH HEPCGN_06140 0.24 +0.2 1,102,313 + ynfH HEPCGN_06140 0.26 -1.9 1,102,314 - ynfH HEPCGN_06140 0.26 +0.2 1,102,415 - ynfH HEPCGN_06140 0.38 +0.0 1,102,415 - ynfH HEPCGN_06140 0.38 -0.7 1,102,415 - ynfH HEPCGN_06140 0.38 -0.5 1,102,455 - ynfH HEPCGN_06140 0.43 -0.2 1,102,472 + ynfH HEPCGN_06140 0.45 -1.2 1,102,473 - ynfH HEPCGN_06140 0.45 +1.0 1,102,473 - ynfH HEPCGN_06140 0.45 -0.2 1,102,495 + ynfH HEPCGN_06140 0.48 +1.2 1,102,500 + ynfH HEPCGN_06140 0.48 -1.2 1,102,647 - ynfH HEPCGN_06140 0.65 -0.4 1,102,817 - ynfH HEPCGN_06140 0.85 -0.9 1,102,880 + -0.1 1,102,884 - +0.7 1,102,884 - -0.0 1,102,945 + +0.2
Or see this region's nucleotide sequence