Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadE and osmE are separated by 201 nucleotides osmE and chbB are separated by 298 nucleotides chbB and chbC are separated by 84 nucleotides
HEPCGN_05315: nadE - ammonia-dependent NAD(+) synthetase, at 938,526 to 939,353
nadE
HEPCGN_05320: osmE - osmotically-inducible lipoprotein OsmE, at 939,555 to 939,893
osmE
HEPCGN_05325: chbB - PTS N,N'-diacetylchitobiose transporter subunit IIB, at 940,192 to 940,512
chbB
HEPCGN_05330: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 940,597 to 941,955
chbC
Position (kb) 940
941 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 939.526 kb on + strand at 939.599 kb on - strand, within osmE at 939.617 kb on + strand, within osmE at 939.618 kb on - strand, within osmE at 939.624 kb on + strand, within osmE at 939.649 kb on + strand, within osmE at 939.752 kb on + strand, within osmE at 939.752 kb on + strand, within osmE at 939.788 kb on + strand, within osmE at 939.789 kb on - strand, within osmE at 939.917 kb on + strand at 939.917 kb on + strand at 939.965 kb on - strand at 939.968 kb on + strand at 940.053 kb on + strand at 940.067 kb on - strand at 940.067 kb on - strand at 940.074 kb on - strand at 940.076 kb on - strand at 940.119 kb on - strand at 940.164 kb on - strand at 940.170 kb on - strand at 940.170 kb on - strand at 940.210 kb on + strand at 940.245 kb on - strand, within chbB at 940.376 kb on - strand, within chbB at 940.377 kb on + strand, within chbB at 940.378 kb on - strand, within chbB at 940.378 kb on - strand, within chbB at 940.972 kb on - strand, within chbC at 941.040 kb on + strand, within chbC at 941.220 kb on + strand, within chbC at 941.256 kb on + strand, within chbC at 941.305 kb on + strand, within chbC
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 939,526 + +1.6 939,599 - osmE HEPCGN_05320 0.13 +0.6 939,617 + osmE HEPCGN_05320 0.18 -0.5 939,618 - osmE HEPCGN_05320 0.19 +0.3 939,624 + osmE HEPCGN_05320 0.20 +1.1 939,649 + osmE HEPCGN_05320 0.28 -1.0 939,752 + osmE HEPCGN_05320 0.58 -0.3 939,752 + osmE HEPCGN_05320 0.58 -1.0 939,788 + osmE HEPCGN_05320 0.69 +0.3 939,789 - osmE HEPCGN_05320 0.69 +0.8 939,917 + -1.4 939,917 + +0.6 939,965 - -0.5 939,968 + +0.4 940,053 + -0.0 940,067 - -0.9 940,067 - +1.8 940,074 - +0.1 940,076 - -0.6 940,119 - -1.4 940,164 - +0.8 940,170 - +2.8 940,170 - +0.9 940,210 + -0.4 940,245 - chbB HEPCGN_05325 0.17 +1.8 940,376 - chbB HEPCGN_05325 0.57 +0.8 940,377 + chbB HEPCGN_05325 0.58 -0.4 940,378 - chbB HEPCGN_05325 0.58 +1.1 940,378 - chbB HEPCGN_05325 0.58 -0.0 940,972 - chbC HEPCGN_05330 0.28 +0.7 941,040 + chbC HEPCGN_05330 0.33 -2.2 941,220 + chbC HEPCGN_05330 0.46 +0.6 941,256 + chbC HEPCGN_05330 0.48 +0.6 941,305 + chbC HEPCGN_05330 0.52 -1.2
Or see this region's nucleotide sequence