Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04785

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntptrB and exoX overlap by 4 nucleotidesexoX and yobB are separated by 23 nucleotidesyobB and holE are separated by 101 nucleotides HEPCGN_04780: ptrB - oligopeptidase B, at 833,966 to 836,026 ptrB HEPCGN_04785: exoX - exodeoxyribonuclease X, at 836,023 to 836,685 exoX HEPCGN_04790: yobB - Uncharacterized protein YobB, at 836,709 to 837,365 yobB HEPCGN_04795: holE - DNA polymerase III subunit theta, at 837,467 to 837,697 holE Position (kb) 836 837Strain fitness (log2 ratio) -2 -1 0 1 2 3at 835.044 kb on - strand, within ptrBat 835.123 kb on + strand, within ptrBat 835.268 kb on + strand, within ptrBat 835.339 kb on + strand, within ptrBat 835.443 kb on - strand, within ptrBat 835.475 kb on - strand, within ptrBat 835.513 kb on - strand, within ptrBat 835.651 kb on - strand, within ptrBat 835.731 kb on - strand, within ptrBat 835.830 kb on - strandat 835.891 kb on - strandat 835.927 kb on + strandat 836.235 kb on + strand, within exoXat 836.236 kb on - strand, within exoXat 836.236 kb on - strand, within exoXat 836.238 kb on + strand, within exoXat 836.262 kb on + strand, within exoXat 836.264 kb on + strand, within exoXat 836.265 kb on - strand, within exoXat 836.265 kb on - strand, within exoXat 836.273 kb on + strand, within exoXat 836.274 kb on - strand, within exoXat 836.331 kb on + strand, within exoXat 836.332 kb on - strand, within exoXat 836.334 kb on - strand, within exoXat 836.334 kb on - strand, within exoXat 836.335 kb on + strand, within exoXat 836.336 kb on - strand, within exoXat 836.343 kb on + strand, within exoXat 836.389 kb on - strand, within exoXat 836.456 kb on + strand, within exoXat 836.457 kb on - strand, within exoXat 836.457 kb on - strand, within exoXat 836.471 kb on + strand, within exoXat 836.472 kb on - strand, within exoXat 836.474 kb on + strand, within exoXat 836.556 kb on + strand, within exoXat 836.559 kb on + strand, within exoXat 836.559 kb on + strand, within exoXat 836.674 kb on - strandat 836.828 kb on + strand, within yobBat 836.966 kb on + strand, within yobBat 836.966 kb on + strand, within yobBat 836.966 kb on + strand, within yobBat 836.966 kb on + strand, within yobBat 837.041 kb on - strand, within yobBat 837.056 kb on + strand, within yobBat 837.057 kb on - strand, within yobBat 837.103 kb on + strand, within yobBat 837.104 kb on - strand, within yobBat 837.104 kb on - strand, within yobBat 837.169 kb on - strand, within yobBat 837.172 kb on - strand, within yobBat 837.300 kb on + strandat 837.334 kb on + strandat 837.335 kb on - strandat 837.335 kb on - strandat 837.366 kb on - strandat 837.460 kb on - strandat 837.460 kb on - strandat 837.602 kb on - strand, within holEat 837.602 kb on - strand, within holEat 837.606 kb on + strand, within holEat 837.606 kb on + strand, within holEat 837.606 kb on + strand, within holEat 837.616 kb on + strand, within holEat 837.616 kb on + strand, within holEat 837.617 kb on - strand, within holE

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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835,044 - ptrB HEPCGN_04780 0.52 +0.8
835,123 + ptrB HEPCGN_04780 0.56 +0.9
835,268 + ptrB HEPCGN_04780 0.63 +0.2
835,339 + ptrB HEPCGN_04780 0.67 -0.0
835,443 - ptrB HEPCGN_04780 0.72 +0.5
835,475 - ptrB HEPCGN_04780 0.73 +1.3
835,513 - ptrB HEPCGN_04780 0.75 -0.2
835,651 - ptrB HEPCGN_04780 0.82 -0.3
835,731 - ptrB HEPCGN_04780 0.86 -0.4
835,830 - +0.1
835,891 - -1.3
835,927 + +0.9
836,235 + exoX HEPCGN_04785 0.32 +0.1
836,236 - exoX HEPCGN_04785 0.32 +0.9
836,236 - exoX HEPCGN_04785 0.32 +2.3
836,238 + exoX HEPCGN_04785 0.32 -0.8
836,262 + exoX HEPCGN_04785 0.36 -0.3
836,264 + exoX HEPCGN_04785 0.36 +0.9
836,265 - exoX HEPCGN_04785 0.37 -1.2
836,265 - exoX HEPCGN_04785 0.37 -0.9
836,273 + exoX HEPCGN_04785 0.38 -0.4
836,274 - exoX HEPCGN_04785 0.38 +0.4
836,331 + exoX HEPCGN_04785 0.46 +1.1
836,332 - exoX HEPCGN_04785 0.47 +1.3
836,334 - exoX HEPCGN_04785 0.47 -1.1
836,334 - exoX HEPCGN_04785 0.47 +0.6
836,335 + exoX HEPCGN_04785 0.47 -0.3
836,336 - exoX HEPCGN_04785 0.47 -1.2
836,343 + exoX HEPCGN_04785 0.48 +0.1
836,389 - exoX HEPCGN_04785 0.55 +2.9
836,456 + exoX HEPCGN_04785 0.65 +0.0
836,457 - exoX HEPCGN_04785 0.65 -0.1
836,457 - exoX HEPCGN_04785 0.65 +0.1
836,471 + exoX HEPCGN_04785 0.68 +0.4
836,472 - exoX HEPCGN_04785 0.68 -1.2
836,474 + exoX HEPCGN_04785 0.68 +0.3
836,556 + exoX HEPCGN_04785 0.80 -0.9
836,559 + exoX HEPCGN_04785 0.81 +0.4
836,559 + exoX HEPCGN_04785 0.81 +0.5
836,674 - -0.5
836,828 + yobB HEPCGN_04790 0.18 -0.3
836,966 + yobB HEPCGN_04790 0.39 +0.1
836,966 + yobB HEPCGN_04790 0.39 -0.2
836,966 + yobB HEPCGN_04790 0.39 +1.5
836,966 + yobB HEPCGN_04790 0.39 -2.0
837,041 - yobB HEPCGN_04790 0.51 -0.8
837,056 + yobB HEPCGN_04790 0.53 -1.0
837,057 - yobB HEPCGN_04790 0.53 -1.4
837,103 + yobB HEPCGN_04790 0.60 +0.1
837,104 - yobB HEPCGN_04790 0.60 +0.1
837,104 - yobB HEPCGN_04790 0.60 +0.4
837,169 - yobB HEPCGN_04790 0.70 +0.5
837,172 - yobB HEPCGN_04790 0.70 -0.1
837,300 + +0.2
837,334 + +0.1
837,335 - +0.1
837,335 - +0.0
837,366 - +1.3
837,460 - -0.7
837,460 - +1.1
837,602 - holE HEPCGN_04795 0.58 +0.0
837,602 - holE HEPCGN_04795 0.58 +0.6
837,606 + holE HEPCGN_04795 0.60 +0.5
837,606 + holE HEPCGN_04795 0.60 +1.6
837,606 + holE HEPCGN_04795 0.60 -0.2
837,616 + holE HEPCGN_04795 0.65 +0.4
837,616 + holE HEPCGN_04795 0.65 -0.4
837,617 - holE HEPCGN_04795 0.65 +0.2

Or see this region's nucleotide sequence