Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_01415 and HEPCGN_01420 are separated by 80 nucleotides HEPCGN_01420 and cydA are separated by 805 nucleotides
HEPCGN_01415: HEPCGN_01415 - hypothetical protein, at 214,081 to 214,503
_01415
HEPCGN_01420: HEPCGN_01420 - hypothetical protein, at 214,584 to 215,528
_01420
HEPCGN_01425: cydA - cytochrome ubiquinol oxidase subunit I, at 216,334 to 217,902
cydA
Position (kb) 214
215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 213.586 kb on - strand at 213.697 kb on - strand at 214.348 kb on + strand, within HEPCGN_01415 at 214.348 kb on + strand, within HEPCGN_01415 at 214.349 kb on - strand, within HEPCGN_01415 at 214.373 kb on + strand, within HEPCGN_01415 at 214.455 kb on - strand, within HEPCGN_01415 at 214.758 kb on + strand, within HEPCGN_01420 at 214.796 kb on + strand, within HEPCGN_01420 at 214.890 kb on + strand, within HEPCGN_01420 at 214.890 kb on + strand, within HEPCGN_01420 at 214.935 kb on + strand, within HEPCGN_01420 at 214.935 kb on + strand, within HEPCGN_01420 at 215.079 kb on - strand, within HEPCGN_01420 at 215.182 kb on + strand, within HEPCGN_01420 at 215.219 kb on + strand, within HEPCGN_01420 at 215.334 kb on - strand, within HEPCGN_01420 at 215.453 kb on + strand at 215.475 kb on - strand at 215.528 kb on + strand at 215.529 kb on - strand at 215.529 kb on - strand at 215.616 kb on - strand at 215.669 kb on + strand at 215.669 kb on + strand at 215.781 kb on + strand at 215.810 kb on + strand at 215.821 kb on + strand at 215.891 kb on - strand at 215.970 kb on + strand at 216.146 kb on + strand at 216.151 kb on + strand at 216.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 213,586 - -0.3 213,697 - +0.1 214,348 + HEPCGN_01415 0.63 +0.4 214,348 + HEPCGN_01415 0.63 -0.2 214,349 - HEPCGN_01415 0.63 -0.9 214,373 + HEPCGN_01415 0.69 -0.3 214,455 - HEPCGN_01415 0.88 +1.1 214,758 + HEPCGN_01420 0.18 +1.1 214,796 + HEPCGN_01420 0.22 +0.2 214,890 + HEPCGN_01420 0.32 +4.2 214,890 + HEPCGN_01420 0.32 -2.6 214,935 + HEPCGN_01420 0.37 +0.2 214,935 + HEPCGN_01420 0.37 +0.3 215,079 - HEPCGN_01420 0.52 -0.2 215,182 + HEPCGN_01420 0.63 -1.2 215,219 + HEPCGN_01420 0.67 +2.0 215,334 - HEPCGN_01420 0.79 +3.0 215,453 + -1.9 215,475 - -1.1 215,528 + -1.8 215,529 - +0.4 215,529 - -1.1 215,616 - +0.4 215,669 + +0.4 215,669 + +0.8 215,781 + -1.4 215,810 + -2.0 215,821 + -0.9 215,891 - +1.6 215,970 + -0.8 216,146 + -1.1 216,151 + +0.0 216,155 + -0.2
Or see this region's nucleotide sequence