Experiment: Phi92
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glmL and glmS overlap by 1 nucleotides glmS and HEPCGN_01415 are separated by 546 nucleotides
HEPCGN_01405: glmL - methylaspartate mutase accessory protein GlmL, at 211,697 to 213,085
glmL
HEPCGN_01410: glmS - methylaspartate mutase subunit S, at 213,085 to 213,534
glmS
HEPCGN_01415: HEPCGN_01415 - hypothetical protein, at 214,081 to 214,503
_01415
Position (kb) 213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 212.094 kb on - strand, within glmL at 212.106 kb on + strand, within glmL at 212.107 kb on - strand, within glmL at 212.160 kb on - strand, within glmL at 212.160 kb on - strand, within glmL at 212.359 kb on + strand, within glmL at 212.471 kb on + strand, within glmL at 212.471 kb on + strand, within glmL at 212.472 kb on - strand, within glmL at 212.482 kb on + strand, within glmL at 212.498 kb on + strand, within glmL at 212.608 kb on + strand, within glmL at 212.608 kb on + strand, within glmL at 212.754 kb on + strand, within glmL at 212.760 kb on + strand, within glmL at 212.763 kb on + strand, within glmL at 212.821 kb on + strand, within glmL at 212.920 kb on + strand, within glmL at 212.920 kb on + strand, within glmL at 212.920 kb on + strand, within glmL at 212.921 kb on - strand, within glmL at 212.924 kb on + strand, within glmL at 212.931 kb on - strand, within glmL at 212.993 kb on + strand at 213.111 kb on + strand at 213.112 kb on - strand at 213.136 kb on - strand, within glmS at 213.270 kb on - strand, within glmS at 213.344 kb on + strand, within glmS at 213.349 kb on - strand, within glmS at 213.349 kb on - strand, within glmS at 213.429 kb on + strand, within glmS at 213.482 kb on - strand, within glmS at 213.586 kb on - strand at 213.697 kb on - strand at 214.348 kb on + strand, within HEPCGN_01415 at 214.348 kb on + strand, within HEPCGN_01415 at 214.349 kb on - strand, within HEPCGN_01415 at 214.373 kb on + strand, within HEPCGN_01415 at 214.455 kb on - strand, within HEPCGN_01415
Per-strain Table
Position Strand Gene LocusTag Fraction Phi92 remove 212,094 - glmL HEPCGN_01405 0.29 -1.1 212,106 + glmL HEPCGN_01405 0.29 +0.9 212,107 - glmL HEPCGN_01405 0.30 +0.4 212,160 - glmL HEPCGN_01405 0.33 +1.6 212,160 - glmL HEPCGN_01405 0.33 -0.3 212,359 + glmL HEPCGN_01405 0.48 +1.2 212,471 + glmL HEPCGN_01405 0.56 +1.3 212,471 + glmL HEPCGN_01405 0.56 +0.4 212,472 - glmL HEPCGN_01405 0.56 +0.0 212,482 + glmL HEPCGN_01405 0.57 +0.4 212,498 + glmL HEPCGN_01405 0.58 +1.8 212,608 + glmL HEPCGN_01405 0.66 -0.8 212,608 + glmL HEPCGN_01405 0.66 -0.8 212,754 + glmL HEPCGN_01405 0.76 -2.9 212,760 + glmL HEPCGN_01405 0.77 +0.3 212,763 + glmL HEPCGN_01405 0.77 +0.3 212,821 + glmL HEPCGN_01405 0.81 -1.4 212,920 + glmL HEPCGN_01405 0.88 -0.6 212,920 + glmL HEPCGN_01405 0.88 -0.6 212,920 + glmL HEPCGN_01405 0.88 -0.1 212,921 - glmL HEPCGN_01405 0.88 +0.9 212,924 + glmL HEPCGN_01405 0.88 +0.0 212,931 - glmL HEPCGN_01405 0.89 -0.1 212,993 + -0.3 213,111 + -0.0 213,112 - -0.2 213,136 - glmS HEPCGN_01410 0.11 -0.0 213,270 - glmS HEPCGN_01410 0.41 -0.2 213,344 + glmS HEPCGN_01410 0.58 -0.9 213,349 - glmS HEPCGN_01410 0.59 +2.0 213,349 - glmS HEPCGN_01410 0.59 +0.0 213,429 + glmS HEPCGN_01410 0.76 +0.3 213,482 - glmS HEPCGN_01410 0.88 -0.5 213,586 - -0.3 213,697 - +0.1 214,348 + HEPCGN_01415 0.63 +0.4 214,348 + HEPCGN_01415 0.63 -0.2 214,349 - HEPCGN_01415 0.63 -0.9 214,373 + HEPCGN_01415 0.69 -0.3 214,455 - HEPCGN_01415 0.88 +1.1
Or see this region's nucleotide sequence