Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00355

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_00355 and HEPCGN_00360 are separated by 56 nucleotidesHEPCGN_00360 and HEPCGN_00365 are separated by 132 nucleotides HEPCGN_00355: HEPCGN_00355 - head decoration protein, at 21 to 353 _00355 HEPCGN_00360: HEPCGN_00360 - Capsid protein, at 410 to 685 _00360 HEPCGN_00365: HEPCGN_00365 - integrase, at 818 to 2,053 _00365 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.009 kb on + strandat 0.009 kb on + strandat 0.009 kb on + strandat 0.020 kb on + strandat 0.246 kb on + strand, within HEPCGN_00355at 0.246 kb on + strand, within HEPCGN_00355at 0.357 kb on + strandat 0.371 kb on - strandat 0.419 kb on + strandat 0.658 kb on - strandat 0.861 kb on - strandat 0.931 kb on + strandat 0.931 kb on + strandat 0.932 kb on - strandat 0.959 kb on + strand, within HEPCGN_00365at 0.959 kb on + strand, within HEPCGN_00365at 1.011 kb on - strand, within HEPCGN_00365at 1.149 kb on + strand, within HEPCGN_00365at 1.174 kb on + strand, within HEPCGN_00365at 1.174 kb on + strand, within HEPCGN_00365at 1.186 kb on + strand, within HEPCGN_00365at 1.187 kb on - strand, within HEPCGN_00365at 1.235 kb on + strand, within HEPCGN_00365at 1.235 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.269 kb on + strand, within HEPCGN_00365at 1.270 kb on - strand, within HEPCGN_00365at 1.328 kb on + strand, within HEPCGN_00365

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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9 + +0.7
9 + -1.4
9 + +0.2
20 + -0.3
246 + HEPCGN_00355 0.68 +1.1
246 + HEPCGN_00355 0.68 -0.1
357 + -1.2
371 - +0.5
419 + -1.5
658 - -0.7
861 - +1.2
931 + +0.0
931 + -1.6
932 - -0.1
959 + HEPCGN_00365 0.11 +0.2
959 + HEPCGN_00365 0.11 +1.1
1,011 - HEPCGN_00365 0.16 +0.3
1,149 + HEPCGN_00365 0.27 +0.2
1,174 + HEPCGN_00365 0.29 -0.7
1,174 + HEPCGN_00365 0.29 -1.3
1,186 + HEPCGN_00365 0.30 +0.7
1,187 - HEPCGN_00365 0.30 +1.4
1,235 + HEPCGN_00365 0.34 -0.3
1,235 + HEPCGN_00365 0.34 +0.1
1,269 + HEPCGN_00365 0.36 -0.9
1,269 + HEPCGN_00365 0.36 -0.8
1,269 + HEPCGN_00365 0.36 -0.7
1,269 + HEPCGN_00365 0.36 -0.4
1,270 - HEPCGN_00365 0.37 -0.2
1,328 + HEPCGN_00365 0.41 +0.7

Or see this region's nucleotide sequence