Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00155

Experiment: Phi92

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttopB and HEPCGN_00155 are separated by 220 nucleotidesHEPCGN_00155 and HEPCGN_00160 are separated by 106 nucleotides HEPCGN_00150: topB - DNA topoisomerase III, at 2,100 to 4,253 topB HEPCGN_00155: HEPCGN_00155 - DNA-binding protein, at 4,474 to 4,938 _00155 HEPCGN_00160: HEPCGN_00160 - hypothetical protein, at 5,045 to 5,698 _00160 Position (kb) 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3.527 kb on + strand, within topBat 3.696 kb on - strand, within topBat 3.836 kb on - strand, within topBat 4.022 kb on + strand, within topBat 4.023 kb on - strand, within topBat 4.183 kb on - strandat 4.303 kb on + strandat 4.368 kb on - strandat 4.420 kb on + strandat 4.446 kb on - strandat 4.454 kb on + strandat 4.467 kb on + strandat 4.468 kb on - strandat 4.471 kb on + strandat 4.501 kb on + strandat 4.502 kb on - strandat 4.521 kb on + strand, within HEPCGN_00155at 4.521 kb on + strand, within HEPCGN_00155at 4.521 kb on + strand, within HEPCGN_00155at 4.521 kb on + strand, within HEPCGN_00155at 4.690 kb on + strand, within HEPCGN_00155at 4.691 kb on - strand, within HEPCGN_00155at 4.691 kb on - strand, within HEPCGN_00155at 4.691 kb on - strand, within HEPCGN_00155at 4.691 kb on - strand, within HEPCGN_00155at 4.697 kb on + strand, within HEPCGN_00155at 4.698 kb on - strand, within HEPCGN_00155at 4.746 kb on + strand, within HEPCGN_00155at 4.746 kb on + strand, within HEPCGN_00155at 4.747 kb on - strand, within HEPCGN_00155at 4.747 kb on - strand, within HEPCGN_00155at 4.796 kb on - strand, within HEPCGN_00155at 4.941 kb on + strandat 4.942 kb on - strandat 5.064 kb on + strandat 5.128 kb on + strand, within HEPCGN_00160at 5.152 kb on + strand, within HEPCGN_00160at 5.153 kb on - strand, within HEPCGN_00160at 5.183 kb on - strand, within HEPCGN_00160at 5.185 kb on + strand, within HEPCGN_00160at 5.185 kb on + strand, within HEPCGN_00160at 5.210 kb on - strand, within HEPCGN_00160at 5.210 kb on - strand, within HEPCGN_00160at 5.210 kb on - strand, within HEPCGN_00160at 5.213 kb on - strand, within HEPCGN_00160at 5.232 kb on + strand, within HEPCGN_00160at 5.255 kb on + strand, within HEPCGN_00160at 5.257 kb on + strand, within HEPCGN_00160at 5.257 kb on + strand, within HEPCGN_00160at 5.258 kb on - strand, within HEPCGN_00160at 5.258 kb on - strand, within HEPCGN_00160at 5.258 kb on - strand, within HEPCGN_00160at 5.258 kb on - strand, within HEPCGN_00160at 5.284 kb on - strand, within HEPCGN_00160at 5.313 kb on + strand, within HEPCGN_00160at 5.314 kb on - strand, within HEPCGN_00160at 5.348 kb on - strand, within HEPCGN_00160at 5.377 kb on + strand, within HEPCGN_00160at 5.377 kb on + strand, within HEPCGN_00160at 5.378 kb on - strand, within HEPCGN_00160at 5.408 kb on + strand, within HEPCGN_00160at 5.478 kb on - strand, within HEPCGN_00160at 5.478 kb on - strand, within HEPCGN_00160at 5.478 kb on - strand, within HEPCGN_00160at 5.479 kb on + strand, within HEPCGN_00160at 5.479 kb on + strand, within HEPCGN_00160at 5.480 kb on - strand, within HEPCGN_00160at 5.493 kb on + strand, within HEPCGN_00160at 5.493 kb on + strand, within HEPCGN_00160at 5.494 kb on - strand, within HEPCGN_00160at 5.521 kb on + strand, within HEPCGN_00160at 5.613 kb on + strand, within HEPCGN_00160at 5.656 kb on + strandat 5.656 kb on + strandat 5.656 kb on + strandat 5.656 kb on + strandat 5.704 kb on - strandat 5.715 kb on + strandat 5.736 kb on - strandat 5.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phi92
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3,527 + topB HEPCGN_00150 0.66 -2.9
3,696 - topB HEPCGN_00150 0.74 +0.4
3,836 - topB HEPCGN_00150 0.81 +0.3
4,022 + topB HEPCGN_00150 0.89 +0.0
4,023 - topB HEPCGN_00150 0.89 +0.1
4,183 - +0.2
4,303 + -1.3
4,368 - -0.1
4,420 + -1.2
4,446 - +0.8
4,454 + -1.0
4,467 + +2.8
4,468 - -1.1
4,471 + -0.7
4,501 + +0.9
4,502 - +0.8
4,521 + HEPCGN_00155 0.10 +0.9
4,521 + HEPCGN_00155 0.10 +0.3
4,521 + HEPCGN_00155 0.10 +0.8
4,521 + HEPCGN_00155 0.10 +0.6
4,690 + HEPCGN_00155 0.46 +1.7
4,691 - HEPCGN_00155 0.47 +2.0
4,691 - HEPCGN_00155 0.47 +0.4
4,691 - HEPCGN_00155 0.47 +0.7
4,691 - HEPCGN_00155 0.47 +2.4
4,697 + HEPCGN_00155 0.48 +0.0
4,698 - HEPCGN_00155 0.48 -0.0
4,746 + HEPCGN_00155 0.58 +2.1
4,746 + HEPCGN_00155 0.58 +1.3
4,747 - HEPCGN_00155 0.59 +1.4
4,747 - HEPCGN_00155 0.59 +0.9
4,796 - HEPCGN_00155 0.69 +0.1
4,941 + +0.7
4,942 - -0.0
5,064 + +1.6
5,128 + HEPCGN_00160 0.13 -0.2
5,152 + HEPCGN_00160 0.16 -0.1
5,153 - HEPCGN_00160 0.17 +0.6
5,183 - HEPCGN_00160 0.21 -0.8
5,185 + HEPCGN_00160 0.21 +0.4
5,185 + HEPCGN_00160 0.21 -1.4
5,210 - HEPCGN_00160 0.25 +0.2
5,210 - HEPCGN_00160 0.25 -0.3
5,210 - HEPCGN_00160 0.25 +0.7
5,213 - HEPCGN_00160 0.26 +0.4
5,232 + HEPCGN_00160 0.29 +1.9
5,255 + HEPCGN_00160 0.32 +0.1
5,257 + HEPCGN_00160 0.32 -0.7
5,257 + HEPCGN_00160 0.32 +0.7
5,258 - HEPCGN_00160 0.33 -0.6
5,258 - HEPCGN_00160 0.33 +0.1
5,258 - HEPCGN_00160 0.33 -0.5
5,258 - HEPCGN_00160 0.33 +0.4
5,284 - HEPCGN_00160 0.37 -0.5
5,313 + HEPCGN_00160 0.41 +0.4
5,314 - HEPCGN_00160 0.41 -0.4
5,348 - HEPCGN_00160 0.46 -0.3
5,377 + HEPCGN_00160 0.51 +1.9
5,377 + HEPCGN_00160 0.51 -1.3
5,378 - HEPCGN_00160 0.51 -1.2
5,408 + HEPCGN_00160 0.56 -1.2
5,478 - HEPCGN_00160 0.66 -0.1
5,478 - HEPCGN_00160 0.66 +0.2
5,478 - HEPCGN_00160 0.66 +0.6
5,479 + HEPCGN_00160 0.66 +0.6
5,479 + HEPCGN_00160 0.66 -0.2
5,480 - HEPCGN_00160 0.67 +0.6
5,493 + HEPCGN_00160 0.69 +1.0
5,493 + HEPCGN_00160 0.69 -0.9
5,494 - HEPCGN_00160 0.69 +0.1
5,521 + HEPCGN_00160 0.73 +0.3
5,613 + HEPCGN_00160 0.87 -0.1
5,656 + -0.5
5,656 + -0.6
5,656 + +0.2
5,656 + -0.5
5,704 - +1.0
5,715 + -0.7
5,736 - +0.2
5,736 - -0.4

Or see this region's nucleotide sequence