Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06874

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06873 and MPMX19_06874 are separated by 113 nucleotidesMPMX19_06874 and MPMX19_06875 overlap by 8 nucleotidesMPMX19_06875 and MPMX19_06876 are separated by 235 nucleotides MPMX19_06873: MPMX19_06873 - F420-dependent glucose-6-phosphate dehydrogenase, at 144,361 to 145,500 _06873 MPMX19_06874: MPMX19_06874 - hypothetical protein, at 145,614 to 146,402 _06874 MPMX19_06875: MPMX19_06875 - Carnitinyl-CoA dehydratase, at 146,395 to 147,159 _06875 MPMX19_06876: MPMX19_06876 - Inner membrane amino-acid ABC transporter permease protein YhdY, at 147,395 to 148,471 _06876 Position (kb) 145 146 147Strain fitness (log2 ratio) -2 -1 0 1at 144.620 kb on + strand, within MPMX19_06873at 144.620 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.671 kb on + strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.672 kb on - strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.677 kb on + strand, within MPMX19_06873at 144.678 kb on - strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.731 kb on + strand, within MPMX19_06873at 144.732 kb on - strand, within MPMX19_06873at 144.732 kb on - strand, within MPMX19_06873at 144.752 kb on + strand, within MPMX19_06873at 144.752 kb on + strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.753 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.900 kb on - strand, within MPMX19_06873at 144.986 kb on + strand, within MPMX19_06873at 145.034 kb on + strand, within MPMX19_06873at 145.175 kb on + strand, within MPMX19_06873at 145.175 kb on + strand, within MPMX19_06873at 145.176 kb on - strand, within MPMX19_06873at 145.176 kb on - strand, within MPMX19_06873at 145.311 kb on - strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.316 kb on + strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.317 kb on - strand, within MPMX19_06873at 145.822 kb on + strand, within MPMX19_06874at 145.822 kb on + strand, within MPMX19_06874at 145.822 kb on + strand, within MPMX19_06874at 145.822 kb on + strand, within MPMX19_06874at 146.104 kb on + strand, within MPMX19_06874at 146.104 kb on + strand, within MPMX19_06874at 146.104 kb on + strand, within MPMX19_06874at 146.105 kb on - strand, within MPMX19_06874at 146.687 kb on + strand, within MPMX19_06875at 146.688 kb on - strand, within MPMX19_06875at 146.856 kb on - strand, within MPMX19_06875at 147.139 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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144,620 + MPMX19_06873 0.23 +0.1
144,620 + MPMX19_06873 0.23 -0.5
144,671 + MPMX19_06873 0.27 -0.1
144,671 + MPMX19_06873 0.27 -0.3
144,671 + MPMX19_06873 0.27 -0.5
144,671 + MPMX19_06873 0.27 -0.2
144,671 + MPMX19_06873 0.27 +0.4
144,671 + MPMX19_06873 0.27 -0.3
144,672 - MPMX19_06873 0.27 +0.9
144,672 - MPMX19_06873 0.27 +0.8
144,672 - MPMX19_06873 0.27 -0.5
144,672 - MPMX19_06873 0.27 -0.1
144,672 - MPMX19_06873 0.27 -1.1
144,672 - MPMX19_06873 0.27 -0.2
144,672 - MPMX19_06873 0.27 -1.2
144,677 + MPMX19_06873 0.28 +0.5
144,677 + MPMX19_06873 0.28 +0.5
144,677 + MPMX19_06873 0.28 -1.8
144,677 + MPMX19_06873 0.28 -0.5
144,678 - MPMX19_06873 0.28 +0.5
144,731 + MPMX19_06873 0.32 -0.6
144,731 + MPMX19_06873 0.32 +0.3
144,731 + MPMX19_06873 0.32 -0.3
144,731 + MPMX19_06873 0.32 -0.2
144,732 - MPMX19_06873 0.33 -1.1
144,732 - MPMX19_06873 0.33 +0.4
144,752 + MPMX19_06873 0.34 +1.1
144,752 + MPMX19_06873 0.34 -1.9
144,753 - MPMX19_06873 0.34 +0.7
144,753 - MPMX19_06873 0.34 -1.1
144,753 - MPMX19_06873 0.34 -0.4
144,753 - MPMX19_06873 0.34 -0.8
144,900 - MPMX19_06873 0.47 -0.3
144,900 - MPMX19_06873 0.47 -1.9
144,900 - MPMX19_06873 0.47 -1.1
144,986 + MPMX19_06873 0.55 +1.1
145,034 + MPMX19_06873 0.59 +0.2
145,175 + MPMX19_06873 0.71 +0.1
145,175 + MPMX19_06873 0.71 -0.5
145,176 - MPMX19_06873 0.71 -0.5
145,176 - MPMX19_06873 0.71 -0.1
145,311 - MPMX19_06873 0.83 +0.1
145,316 + MPMX19_06873 0.84 -2.1
145,316 + MPMX19_06873 0.84 -1.3
145,316 + MPMX19_06873 0.84 -0.2
145,317 - MPMX19_06873 0.84 -1.9
145,317 - MPMX19_06873 0.84 -0.3
145,317 - MPMX19_06873 0.84 +1.5
145,317 - MPMX19_06873 0.84 -1.6
145,822 + MPMX19_06874 0.26 +0.1
145,822 + MPMX19_06874 0.26 -0.5
145,822 + MPMX19_06874 0.26 -0.3
145,822 + MPMX19_06874 0.26 +1.2
146,104 + MPMX19_06874 0.62 +1.5
146,104 + MPMX19_06874 0.62 -0.1
146,104 + MPMX19_06874 0.62 +0.9
146,105 - MPMX19_06874 0.62 +0.7
146,687 + MPMX19_06875 0.38 +0.1
146,688 - MPMX19_06875 0.38 -1.3
146,856 - MPMX19_06875 0.60 +0.1
147,139 + -1.6

Or see this region's nucleotide sequence