Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06695 and MPMX19_06696 are separated by 193 nucleotides MPMX19_06696 and MPMX19_06697 are separated by 154 nucleotides MPMX19_06697 and MPMX19_06698 are separated by 11 nucleotides
MPMX19_06695: MPMX19_06695 - hypothetical protein, at 264,964 to 266,169
_06695
MPMX19_06696: MPMX19_06696 - hypothetical protein, at 266,363 to 266,851
_06696
MPMX19_06697: MPMX19_06697 - D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase, at 267,006 to 267,548
_06697
MPMX19_06698: MPMX19_06698 - hypothetical protein, at 267,560 to 267,949
_06698
Position (kb) 266
267 Strain fitness (log2 ratio) -2
-1
0
1 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.970 kb on + strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 265.971 kb on - strand, within MPMX19_06695 at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.135 kb on + strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.136 kb on - strand at 266.171 kb on - strand at 266.171 kb on - strand at 266.219 kb on + strand at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.498 kb on + strand, within MPMX19_06696 at 266.499 kb on - strand, within MPMX19_06696 at 266.499 kb on - strand, within MPMX19_06696 at 266.899 kb on + strand at 266.899 kb on + strand at 266.899 kb on + strand at 266.900 kb on - strand at 266.984 kb on + strand at 266.984 kb on + strand at 266.984 kb on + strand at 267.555 kb on - strand at 267.561 kb on + strand at 267.561 kb on + strand at 267.561 kb on + strand at 267.562 kb on - strand at 267.562 kb on - strand at 267.774 kb on + strand, within MPMX19_06698 at 267.774 kb on + strand, within MPMX19_06698 at 267.775 kb on - strand, within MPMX19_06698 at 267.775 kb on - strand, within MPMX19_06698 at 267.775 kb on - strand, within MPMX19_06698 at 267.825 kb on + strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698 at 267.826 kb on - strand, within MPMX19_06698
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 265,970 + MPMX19_06695 0.83 -1.9 265,970 + MPMX19_06695 0.83 -0.6 265,970 + MPMX19_06695 0.83 -0.0 265,970 + MPMX19_06695 0.83 -1.6 265,970 + MPMX19_06695 0.83 -0.8 265,970 + MPMX19_06695 0.83 -1.0 265,970 + MPMX19_06695 0.83 -1.2 265,970 + MPMX19_06695 0.83 +1.3 265,970 + MPMX19_06695 0.83 +0.6 265,970 + MPMX19_06695 0.83 +0.3 265,971 - MPMX19_06695 0.83 -0.2 265,971 - MPMX19_06695 0.83 +0.6 265,971 - MPMX19_06695 0.83 +0.6 265,971 - MPMX19_06695 0.83 -0.2 265,971 - MPMX19_06695 0.83 -0.1 265,971 - MPMX19_06695 0.83 +0.1 265,971 - MPMX19_06695 0.83 +1.2 265,971 - MPMX19_06695 0.83 -0.6 265,971 - MPMX19_06695 0.83 -0.9 265,971 - MPMX19_06695 0.83 +0.6 265,971 - MPMX19_06695 0.83 -0.8 266,135 + +0.0 266,135 + -0.8 266,135 + +0.4 266,135 + -0.7 266,135 + -0.2 266,135 + -2.0 266,135 + -0.4 266,135 + -0.4 266,135 + -0.8 266,135 + -0.3 266,135 + +0.2 266,135 + -0.8 266,135 + -1.3 266,135 + -0.4 266,135 + -0.2 266,135 + -2.1 266,135 + -1.1 266,135 + -2.1 266,135 + -2.0 266,135 + -0.8 266,136 - -1.7 266,136 - -1.2 266,136 - -0.9 266,136 - -1.0 266,136 - -0.0 266,136 - -0.1 266,136 - -0.8 266,136 - -0.5 266,136 - +0.6 266,136 - +0.0 266,136 - +0.3 266,136 - -1.4 266,136 - -0.8 266,136 - -0.0 266,136 - -0.4 266,136 - -0.6 266,136 - -0.3 266,171 - -0.3 266,171 - -0.7 266,219 + -0.3 266,498 + MPMX19_06696 0.28 +0.6 266,498 + MPMX19_06696 0.28 -1.4 266,498 + MPMX19_06696 0.28 -0.7 266,498 + MPMX19_06696 0.28 +0.8 266,498 + MPMX19_06696 0.28 -0.3 266,499 - MPMX19_06696 0.28 -1.1 266,499 - MPMX19_06696 0.28 +1.0 266,899 + +0.4 266,899 + -1.2 266,899 + -0.3 266,900 - -0.3 266,984 + +0.2 266,984 + +1.4 266,984 + +0.9 267,555 - -0.1 267,561 + -1.9 267,561 + -0.1 267,561 + -0.0 267,562 - -0.7 267,562 - +0.4 267,774 + MPMX19_06698 0.55 -0.3 267,774 + MPMX19_06698 0.55 -0.2 267,775 - MPMX19_06698 0.55 -0.4 267,775 - MPMX19_06698 0.55 +0.6 267,775 - MPMX19_06698 0.55 -0.9 267,825 + MPMX19_06698 0.68 +0.2 267,826 - MPMX19_06698 0.68 -0.7 267,826 - MPMX19_06698 0.68 -0.1 267,826 - MPMX19_06698 0.68 -0.2 267,826 - MPMX19_06698 0.68 -0.8 267,826 - MPMX19_06698 0.68 -0.1
Or see this region's nucleotide sequence