Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06226 and MPMX19_06227 are separated by 48 nucleotides MPMX19_06227 and MPMX19_06228 are separated by 42 nucleotides
MPMX19_06226: MPMX19_06226 - Xylose transport system permease protein XylH, at 411,886 to 413,085
_06226
MPMX19_06227: MPMX19_06227 - L-arabinose 1-dehydrogenase (NAD(P)(+)), at 413,134 to 414,072
_06227
MPMX19_06228: MPMX19_06228 - hypothetical protein, at 414,115 to 415,695
_06228
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 412.264 kb on + strand, within MPMX19_06226 at 412.265 kb on - strand, within MPMX19_06226 at 412.276 kb on + strand, within MPMX19_06226 at 412.277 kb on - strand, within MPMX19_06226 at 412.277 kb on - strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.591 kb on + strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.592 kb on - strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.615 kb on + strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.616 kb on - strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.666 kb on + strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.667 kb on - strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.708 kb on + strand, within MPMX19_06226 at 412.709 kb on - strand, within MPMX19_06226 at 412.709 kb on - strand, within MPMX19_06226 at 412.709 kb on - strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.774 kb on + strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 412.775 kb on - strand, within MPMX19_06226 at 413.065 kb on + strand at 413.065 kb on + strand at 413.065 kb on + strand at 413.065 kb on + strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.066 kb on - strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.127 kb on + strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.128 kb on - strand at 413.190 kb on + strand at 413.190 kb on + strand at 413.190 kb on + strand at 413.190 kb on + strand at 413.191 kb on - strand at 413.191 kb on - strand at 413.909 kb on + strand, within MPMX19_06227 at 413.938 kb on + strand, within MPMX19_06227 at 413.938 kb on + strand, within MPMX19_06227 at 413.938 kb on + strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.939 kb on - strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.950 kb on + strand, within MPMX19_06227 at 413.951 kb on - strand, within MPMX19_06227 at 413.951 kb on - strand, within MPMX19_06227 at 414.070 kb on + strand at 414.070 kb on + strand at 414.070 kb on + strand at 414.070 kb on + strand at 414.071 kb on - strand at 414.071 kb on - strand at 414.071 kb on - strand at 414.071 kb on - strand at 414.098 kb on + strand at 414.098 kb on + strand at 414.099 kb on - strand at 414.488 kb on - strand, within MPMX19_06228 at 414.488 kb on - strand, within MPMX19_06228
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 412,264 + MPMX19_06226 0.32 -0.4 412,265 - MPMX19_06226 0.32 +1.1 412,276 + MPMX19_06226 0.33 +0.3 412,277 - MPMX19_06226 0.33 +0.9 412,277 - MPMX19_06226 0.33 +1.0 412,591 + MPMX19_06226 0.59 +0.5 412,591 + MPMX19_06226 0.59 -1.5 412,591 + MPMX19_06226 0.59 -2.7 412,591 + MPMX19_06226 0.59 +0.7 412,591 + MPMX19_06226 0.59 -1.7 412,592 - MPMX19_06226 0.59 +0.7 412,592 - MPMX19_06226 0.59 -1.7 412,592 - MPMX19_06226 0.59 +0.1 412,592 - MPMX19_06226 0.59 -0.1 412,592 - MPMX19_06226 0.59 -0.5 412,592 - MPMX19_06226 0.59 -0.3 412,592 - MPMX19_06226 0.59 +1.7 412,592 - MPMX19_06226 0.59 +0.2 412,592 - MPMX19_06226 0.59 +0.3 412,592 - MPMX19_06226 0.59 -0.9 412,615 + MPMX19_06226 0.61 -0.7 412,615 + MPMX19_06226 0.61 -1.2 412,615 + MPMX19_06226 0.61 -0.3 412,615 + MPMX19_06226 0.61 -1.5 412,615 + MPMX19_06226 0.61 +0.7 412,616 - MPMX19_06226 0.61 +0.1 412,616 - MPMX19_06226 0.61 +1.1 412,616 - MPMX19_06226 0.61 -0.7 412,616 - MPMX19_06226 0.61 +0.9 412,616 - MPMX19_06226 0.61 -0.5 412,616 - MPMX19_06226 0.61 -0.8 412,616 - MPMX19_06226 0.61 -0.7 412,616 - MPMX19_06226 0.61 -0.5 412,616 - MPMX19_06226 0.61 -0.5 412,616 - MPMX19_06226 0.61 +0.3 412,616 - MPMX19_06226 0.61 -0.1 412,666 + MPMX19_06226 0.65 +1.4 412,666 + MPMX19_06226 0.65 +0.2 412,666 + MPMX19_06226 0.65 -0.1 412,666 + MPMX19_06226 0.65 +0.5 412,666 + MPMX19_06226 0.65 -1.7 412,666 + MPMX19_06226 0.65 -0.3 412,666 + MPMX19_06226 0.65 +0.2 412,666 + MPMX19_06226 0.65 -1.3 412,667 - MPMX19_06226 0.65 +0.6 412,667 - MPMX19_06226 0.65 +0.5 412,667 - MPMX19_06226 0.65 +0.1 412,667 - MPMX19_06226 0.65 +0.2 412,667 - MPMX19_06226 0.65 +0.1 412,667 - MPMX19_06226 0.65 +0.2 412,667 - MPMX19_06226 0.65 +1.2 412,667 - MPMX19_06226 0.65 -0.7 412,667 - MPMX19_06226 0.65 +1.0 412,667 - MPMX19_06226 0.65 -0.5 412,667 - MPMX19_06226 0.65 +0.7 412,667 - MPMX19_06226 0.65 -0.0 412,667 - MPMX19_06226 0.65 +2.2 412,708 + MPMX19_06226 0.69 +0.2 412,708 + MPMX19_06226 0.69 -0.0 412,708 + MPMX19_06226 0.69 -1.5 412,708 + MPMX19_06226 0.69 +0.1 412,708 + MPMX19_06226 0.69 +0.2 412,708 + MPMX19_06226 0.69 -0.0 412,708 + MPMX19_06226 0.69 -1.6 412,709 - MPMX19_06226 0.69 -1.0 412,709 - MPMX19_06226 0.69 +0.7 412,709 - MPMX19_06226 0.69 +0.8 412,774 + MPMX19_06226 0.74 +0.2 412,774 + MPMX19_06226 0.74 +0.5 412,774 + MPMX19_06226 0.74 -0.3 412,774 + MPMX19_06226 0.74 +0.2 412,774 + MPMX19_06226 0.74 +0.1 412,774 + MPMX19_06226 0.74 -0.3 412,774 + MPMX19_06226 0.74 -0.5 412,774 + MPMX19_06226 0.74 +0.1 412,774 + MPMX19_06226 0.74 +0.4 412,774 + MPMX19_06226 0.74 +1.0 412,774 + MPMX19_06226 0.74 +0.7 412,774 + MPMX19_06226 0.74 -0.7 412,774 + MPMX19_06226 0.74 -0.7 412,774 + MPMX19_06226 0.74 -0.6 412,774 + MPMX19_06226 0.74 -0.6 412,775 - MPMX19_06226 0.74 +0.1 412,775 - MPMX19_06226 0.74 +0.8 412,775 - MPMX19_06226 0.74 +0.2 412,775 - MPMX19_06226 0.74 +1.3 412,775 - MPMX19_06226 0.74 +0.9 412,775 - MPMX19_06226 0.74 -0.3 412,775 - MPMX19_06226 0.74 +0.7 412,775 - MPMX19_06226 0.74 +0.7 412,775 - MPMX19_06226 0.74 -0.3 413,065 + -0.5 413,065 + -1.3 413,065 + -1.2 413,065 + -1.9 413,066 - -1.7 413,066 - +1.3 413,066 - -1.3 413,066 - -0.3 413,066 - +0.8 413,066 - +1.4 413,066 - +1.9 413,066 - +1.0 413,066 - +0.5 413,127 + -0.3 413,127 + +0.8 413,127 + -0.7 413,127 + +2.1 413,127 + +1.7 413,127 + -0.3 413,127 + -1.8 413,127 + -0.7 413,127 + -1.0 413,127 + -1.9 413,127 + +0.1 413,128 - +1.1 413,128 - +0.2 413,128 - +0.9 413,128 - -1.1 413,128 - +0.5 413,128 - -1.7 413,128 - +1.3 413,128 - +0.8 413,190 + -0.5 413,190 + +0.7 413,190 + +0.5 413,190 + +0.1 413,191 - -0.0 413,191 - -3.0 413,909 + MPMX19_06227 0.83 -1.8 413,938 + MPMX19_06227 0.86 +0.2 413,938 + MPMX19_06227 0.86 +0.3 413,938 + MPMX19_06227 0.86 -0.7 413,939 - MPMX19_06227 0.86 -1.0 413,939 - MPMX19_06227 0.86 -0.8 413,939 - MPMX19_06227 0.86 +1.2 413,939 - MPMX19_06227 0.86 +0.1 413,939 - MPMX19_06227 0.86 -0.5 413,939 - MPMX19_06227 0.86 -1.1 413,939 - MPMX19_06227 0.86 -1.1 413,939 - MPMX19_06227 0.86 -1.3 413,950 + MPMX19_06227 0.87 -1.1 413,950 + MPMX19_06227 0.87 +0.3 413,950 + MPMX19_06227 0.87 -0.9 413,950 + MPMX19_06227 0.87 +0.5 413,950 + MPMX19_06227 0.87 -0.5 413,950 + MPMX19_06227 0.87 -1.6 413,951 - MPMX19_06227 0.87 -0.8 413,951 - MPMX19_06227 0.87 -1.8 414,070 + +0.1 414,070 + -0.1 414,070 + -0.8 414,070 + -0.5 414,071 - +0.7 414,071 - -0.3 414,071 - -0.7 414,071 - +0.3 414,098 + -0.7 414,098 + -0.7 414,099 - -1.3 414,488 - MPMX19_06228 0.24 +0.9 414,488 - MPMX19_06228 0.24 +0.7
Or see this region's nucleotide sequence