Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05708 and MPMX19_05709 are separated by 100 nucleotides MPMX19_05709 and MPMX19_05710 overlap by 4 nucleotides
MPMX19_05708: MPMX19_05708 - hypothetical protein, at 426,483 to 428,561
_05708
MPMX19_05709: MPMX19_05709 - hypothetical protein, at 428,662 to 429,594
_05709
MPMX19_05710: MPMX19_05710 - Uric acid transporter UacT, at 429,591 to 430,955
_05710
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.746 kb on + strand, within MPMX19_05708 at 427.747 kb on - strand, within MPMX19_05708 at 427.747 kb on - strand, within MPMX19_05708 at 427.747 kb on - strand, within MPMX19_05708 at 427.747 kb on - strand, within MPMX19_05708 at 427.747 kb on - strand, within MPMX19_05708 at 427.747 kb on - strand, within MPMX19_05708 at 427.747 kb on - strand, within MPMX19_05708 at 427.839 kb on + strand, within MPMX19_05708 at 427.839 kb on + strand, within MPMX19_05708 at 427.839 kb on + strand, within MPMX19_05708 at 427.839 kb on + strand, within MPMX19_05708 at 427.840 kb on - strand, within MPMX19_05708 at 428.259 kb on + strand, within MPMX19_05708 at 428.274 kb on + strand, within MPMX19_05708 at 428.274 kb on + strand, within MPMX19_05708 at 428.274 kb on + strand, within MPMX19_05708 at 428.623 kb on + strand at 428.623 kb on + strand at 428.623 kb on + strand at 428.654 kb on + strand at 428.654 kb on + strand at 428.654 kb on + strand at 428.654 kb on + strand at 428.655 kb on - strand at 428.872 kb on + strand, within MPMX19_05709 at 428.872 kb on + strand, within MPMX19_05709 at 428.873 kb on - strand, within MPMX19_05709 at 428.938 kb on + strand, within MPMX19_05709 at 428.938 kb on + strand, within MPMX19_05709 at 428.938 kb on + strand, within MPMX19_05709 at 428.939 kb on - strand, within MPMX19_05709 at 428.939 kb on - strand, within MPMX19_05709 at 428.939 kb on - strand, within MPMX19_05709 at 428.939 kb on - strand, within MPMX19_05709 at 428.939 kb on - strand, within MPMX19_05709 at 428.939 kb on - strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.989 kb on + strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 428.990 kb on - strand, within MPMX19_05709 at 429.166 kb on + strand, within MPMX19_05709 at 429.167 kb on - strand, within MPMX19_05709 at 429.205 kb on + strand, within MPMX19_05709 at 429.206 kb on - strand, within MPMX19_05709 at 429.206 kb on - strand, within MPMX19_05709 at 429.409 kb on + strand, within MPMX19_05709 at 429.409 kb on + strand, within MPMX19_05709 at 429.410 kb on - strand, within MPMX19_05709 at 429.410 kb on - strand, within MPMX19_05709 at 429.454 kb on + strand, within MPMX19_05709 at 429.454 kb on + strand, within MPMX19_05709 at 429.454 kb on + strand, within MPMX19_05709 at 429.454 kb on + strand, within MPMX19_05709 at 429.455 kb on - strand, within MPMX19_05709 at 429.455 kb on - strand, within MPMX19_05709 at 429.455 kb on - strand, within MPMX19_05709 at 429.592 kb on + strand at 429.592 kb on + strand at 429.592 kb on + strand at 429.592 kb on + strand at 429.592 kb on + strand at 429.592 kb on + strand at 429.592 kb on + strand at 429.593 kb on - strand at 429.593 kb on - strand at 429.593 kb on - strand at 429.593 kb on - strand at 429.593 kb on - strand at 429.593 kb on - strand at 429.593 kb on - strand at 429.664 kb on + strand at 429.664 kb on + strand at 429.664 kb on + strand at 429.664 kb on + strand at 429.664 kb on + strand at 429.664 kb on + strand at 429.665 kb on - strand at 429.665 kb on - strand at 429.665 kb on - strand at 429.665 kb on - strand at 429.665 kb on - strand at 429.665 kb on - strand at 429.665 kb on - strand at 429.936 kb on + strand, within MPMX19_05710 at 429.936 kb on + strand, within MPMX19_05710 at 429.936 kb on + strand, within MPMX19_05710 at 429.936 kb on + strand, within MPMX19_05710 at 429.936 kb on + strand, within MPMX19_05710 at 429.936 kb on + strand, within MPMX19_05710 at 429.936 kb on + strand, within MPMX19_05710 at 429.937 kb on - strand, within MPMX19_05710 at 429.937 kb on - strand, within MPMX19_05710 at 429.937 kb on - strand, within MPMX19_05710 at 429.937 kb on - strand, within MPMX19_05710 at 429.937 kb on - strand, within MPMX19_05710 at 430.048 kb on + strand, within MPMX19_05710 at 430.048 kb on + strand, within MPMX19_05710 at 430.048 kb on + strand, within MPMX19_05710 at 430.048 kb on + strand, within MPMX19_05710 at 430.049 kb on - strand, within MPMX19_05710 at 430.049 kb on - strand, within MPMX19_05710 at 430.049 kb on - strand, within MPMX19_05710 at 430.049 kb on - strand, within MPMX19_05710 at 430.049 kb on - strand, within MPMX19_05710
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 427,746 + MPMX19_05708 0.61 +0.6 427,746 + MPMX19_05708 0.61 +0.2 427,746 + MPMX19_05708 0.61 +1.6 427,746 + MPMX19_05708 0.61 -1.9 427,746 + MPMX19_05708 0.61 +0.3 427,746 + MPMX19_05708 0.61 -0.1 427,746 + MPMX19_05708 0.61 -0.0 427,746 + MPMX19_05708 0.61 -0.1 427,746 + MPMX19_05708 0.61 +1.2 427,747 - MPMX19_05708 0.61 -0.8 427,747 - MPMX19_05708 0.61 +1.1 427,747 - MPMX19_05708 0.61 -1.4 427,747 - MPMX19_05708 0.61 +1.1 427,747 - MPMX19_05708 0.61 -0.7 427,747 - MPMX19_05708 0.61 +0.3 427,747 - MPMX19_05708 0.61 -0.1 427,839 + MPMX19_05708 0.65 -0.3 427,839 + MPMX19_05708 0.65 -0.9 427,839 + MPMX19_05708 0.65 -0.9 427,839 + MPMX19_05708 0.65 +1.1 427,840 - MPMX19_05708 0.65 -0.5 428,259 + MPMX19_05708 0.85 -0.8 428,274 + MPMX19_05708 0.86 -1.2 428,274 + MPMX19_05708 0.86 -1.4 428,274 + MPMX19_05708 0.86 -0.0 428,623 + -0.3 428,623 + -1.8 428,623 + -1.8 428,654 + +0.7 428,654 + +0.1 428,654 + +0.6 428,654 + -1.1 428,655 - -1.0 428,872 + MPMX19_05709 0.23 -1.2 428,872 + MPMX19_05709 0.23 +0.2 428,873 - MPMX19_05709 0.23 +1.8 428,938 + MPMX19_05709 0.30 -2.1 428,938 + MPMX19_05709 0.30 -0.5 428,938 + MPMX19_05709 0.30 -1.4 428,939 - MPMX19_05709 0.30 -1.0 428,939 - MPMX19_05709 0.30 -1.6 428,939 - MPMX19_05709 0.30 +1.9 428,939 - MPMX19_05709 0.30 -1.2 428,939 - MPMX19_05709 0.30 -0.1 428,939 - MPMX19_05709 0.30 +0.3 428,989 + MPMX19_05709 0.35 +1.0 428,989 + MPMX19_05709 0.35 +0.3 428,989 + MPMX19_05709 0.35 +1.2 428,989 + MPMX19_05709 0.35 +0.5 428,989 + MPMX19_05709 0.35 -1.4 428,989 + MPMX19_05709 0.35 +0.2 428,989 + MPMX19_05709 0.35 -2.0 428,989 + MPMX19_05709 0.35 -0.5 428,989 + MPMX19_05709 0.35 -2.2 428,989 + MPMX19_05709 0.35 -0.4 428,989 + MPMX19_05709 0.35 -0.2 428,989 + MPMX19_05709 0.35 -0.0 428,989 + MPMX19_05709 0.35 -0.0 428,989 + MPMX19_05709 0.35 -1.2 428,989 + MPMX19_05709 0.35 +0.3 428,989 + MPMX19_05709 0.35 -2.0 428,989 + MPMX19_05709 0.35 -1.7 428,989 + MPMX19_05709 0.35 -0.4 428,989 + MPMX19_05709 0.35 -0.2 428,990 - MPMX19_05709 0.35 -1.8 428,990 - MPMX19_05709 0.35 -1.8 428,990 - MPMX19_05709 0.35 -1.1 428,990 - MPMX19_05709 0.35 -2.2 428,990 - MPMX19_05709 0.35 -1.5 428,990 - MPMX19_05709 0.35 -0.1 428,990 - MPMX19_05709 0.35 -1.7 428,990 - MPMX19_05709 0.35 -0.2 428,990 - MPMX19_05709 0.35 +0.4 428,990 - MPMX19_05709 0.35 -1.2 428,990 - MPMX19_05709 0.35 -1.1 428,990 - MPMX19_05709 0.35 +0.1 428,990 - MPMX19_05709 0.35 -0.9 428,990 - MPMX19_05709 0.35 -0.8 428,990 - MPMX19_05709 0.35 +0.3 428,990 - MPMX19_05709 0.35 -1.4 428,990 - MPMX19_05709 0.35 -0.1 428,990 - MPMX19_05709 0.35 -0.2 429,166 + MPMX19_05709 0.54 +1.1 429,167 - MPMX19_05709 0.54 -1.2 429,205 + MPMX19_05709 0.58 -0.9 429,206 - MPMX19_05709 0.58 -0.0 429,206 - MPMX19_05709 0.58 -1.0 429,409 + MPMX19_05709 0.80 -0.4 429,409 + MPMX19_05709 0.80 -0.5 429,410 - MPMX19_05709 0.80 -0.3 429,410 - MPMX19_05709 0.80 -0.2 429,454 + MPMX19_05709 0.85 +0.0 429,454 + MPMX19_05709 0.85 -0.0 429,454 + MPMX19_05709 0.85 -1.6 429,454 + MPMX19_05709 0.85 -0.1 429,455 - MPMX19_05709 0.85 -0.7 429,455 - MPMX19_05709 0.85 -1.6 429,455 - MPMX19_05709 0.85 -0.9 429,592 + +0.4 429,592 + +0.7 429,592 + +0.3 429,592 + -1.5 429,592 + -2.2 429,592 + +1.6 429,592 + -0.6 429,593 - -0.4 429,593 - -1.4 429,593 - -2.0 429,593 - +1.1 429,593 - -0.2 429,593 - +0.3 429,593 - -0.8 429,664 + -0.2 429,664 + -0.7 429,664 + -1.0 429,664 + -0.4 429,664 + -1.2 429,664 + +0.2 429,665 - +0.1 429,665 - +0.7 429,665 - +0.6 429,665 - +1.0 429,665 - -1.6 429,665 - +0.2 429,665 - -1.0 429,936 + MPMX19_05710 0.25 -0.9 429,936 + MPMX19_05710 0.25 +1.0 429,936 + MPMX19_05710 0.25 -0.0 429,936 + MPMX19_05710 0.25 +0.8 429,936 + MPMX19_05710 0.25 +0.3 429,936 + MPMX19_05710 0.25 +0.2 429,936 + MPMX19_05710 0.25 +0.3 429,937 - MPMX19_05710 0.25 +0.9 429,937 - MPMX19_05710 0.25 +1.1 429,937 - MPMX19_05710 0.25 -1.9 429,937 - MPMX19_05710 0.25 -1.1 429,937 - MPMX19_05710 0.25 +1.8 430,048 + MPMX19_05710 0.33 -0.8 430,048 + MPMX19_05710 0.33 +0.3 430,048 + MPMX19_05710 0.33 -0.6 430,048 + MPMX19_05710 0.33 -1.2 430,049 - MPMX19_05710 0.34 -0.5 430,049 - MPMX19_05710 0.34 -0.1 430,049 - MPMX19_05710 0.34 -2.2 430,049 - MPMX19_05710 0.34 -0.5 430,049 - MPMX19_05710 0.34 +0.2
Or see this region's nucleotide sequence