Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05703 and MPMX19_05704 are separated by 267 nucleotides MPMX19_05704 and MPMX19_05705 are separated by 11 nucleotides MPMX19_05705 and MPMX19_05706 are separated by 401 nucleotides
MPMX19_05703: MPMX19_05703 - Ethanolamine ammonia-lyase heavy chain, at 420,282 to 421,673
_05703
MPMX19_05704: MPMX19_05704 - hypothetical protein, at 421,941 to 422,129
_05704
MPMX19_05705: MPMX19_05705 - hypothetical protein, at 422,141 to 422,929
_05705
MPMX19_05706: MPMX19_05706 - hypothetical protein, at 423,331 to 425,361
_05706
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.363 kb on + strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.364 kb on - strand, within MPMX19_05703 at 421.471 kb on + strand, within MPMX19_05703 at 421.472 kb on - strand, within MPMX19_05703 at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.741 kb on + strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.742 kb on - strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.789 kb on + strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.790 kb on - strand at 421.843 kb on + strand at 421.923 kb on + strand at 421.923 kb on + strand at 421.923 kb on + strand at 421.923 kb on + strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 421.924 kb on - strand at 422.250 kb on - strand, within MPMX19_05705 at 422.289 kb on + strand, within MPMX19_05705 at 422.289 kb on + strand, within MPMX19_05705 at 422.290 kb on - strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.292 kb on + strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.293 kb on - strand, within MPMX19_05705 at 422.499 kb on + strand, within MPMX19_05705 at 422.499 kb on + strand, within MPMX19_05705 at 422.499 kb on + strand, within MPMX19_05705 at 422.500 kb on - strand, within MPMX19_05705 at 422.500 kb on - strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.649 kb on + strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.650 kb on - strand, within MPMX19_05705 at 422.724 kb on + strand, within MPMX19_05705 at 422.724 kb on + strand, within MPMX19_05705 at 422.724 kb on + strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.725 kb on - strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.795 kb on + strand, within MPMX19_05705 at 422.796 kb on - strand, within MPMX19_05705 at 422.796 kb on - strand, within MPMX19_05705 at 422.796 kb on - strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.846 kb on + strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.847 kb on - strand, within MPMX19_05705 at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.919 kb on + strand at 422.920 kb on - strand at 422.920 kb on - strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.929 kb on + strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 422.930 kb on - strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.024 kb on + strand at 423.025 kb on - strand at 423.025 kb on - strand at 423.025 kb on - strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.030 kb on + strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.031 kb on - strand at 423.056 kb on + strand at 423.056 kb on + strand at 423.056 kb on + strand at 423.057 kb on - strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.081 kb on + strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.082 kb on - strand at 423.131 kb on - strand at 423.131 kb on - strand at 423.135 kb on + strand at 423.135 kb on + strand at 423.135 kb on + strand at 423.136 kb on - strand at 423.136 kb on - strand at 423.136 kb on - strand at 423.150 kb on - strand at 423.459 kb on + strand at 423.459 kb on + strand at 423.459 kb on + strand at 423.459 kb on + strand at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.898 kb on + strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706 at 423.899 kb on - strand, within MPMX19_05706
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 421,363 + MPMX19_05703 0.78 -0.5 421,363 + MPMX19_05703 0.78 -0.0 421,363 + MPMX19_05703 0.78 -0.4 421,363 + MPMX19_05703 0.78 +1.2 421,363 + MPMX19_05703 0.78 +0.7 421,363 + MPMX19_05703 0.78 +0.9 421,363 + MPMX19_05703 0.78 -0.4 421,363 + MPMX19_05703 0.78 -1.4 421,363 + MPMX19_05703 0.78 +0.6 421,363 + MPMX19_05703 0.78 +1.3 421,363 + MPMX19_05703 0.78 +0.2 421,364 - MPMX19_05703 0.78 -0.2 421,364 - MPMX19_05703 0.78 -1.2 421,364 - MPMX19_05703 0.78 +1.2 421,364 - MPMX19_05703 0.78 -0.2 421,364 - MPMX19_05703 0.78 -0.6 421,364 - MPMX19_05703 0.78 +0.6 421,364 - MPMX19_05703 0.78 +0.9 421,364 - MPMX19_05703 0.78 +0.2 421,471 + MPMX19_05703 0.85 -1.4 421,472 - MPMX19_05703 0.85 +0.1 421,741 + -0.2 421,741 + -0.2 421,741 + -1.6 421,741 + +0.9 421,741 + -0.8 421,741 + -0.3 421,741 + +0.2 421,741 + -0.8 421,741 + -0.0 421,741 + -1.6 421,742 - -0.3 421,742 - +0.9 421,742 - +0.2 421,742 - -0.5 421,742 - -1.4 421,742 - -0.2 421,742 - -0.6 421,742 - -1.0 421,742 - -0.8 421,742 - +1.3 421,742 - -2.3 421,742 - -0.7 421,742 - +0.2 421,742 - -1.3 421,789 + -2.9 421,789 + -0.0 421,789 + -0.5 421,789 + +1.3 421,789 + -1.0 421,789 + -1.4 421,789 + -0.8 421,789 + -0.9 421,789 + +0.1 421,789 + -0.1 421,789 + +1.0 421,789 + -0.8 421,790 - +0.2 421,790 - -0.8 421,790 - -0.9 421,790 - -0.3 421,790 - -1.2 421,843 + -0.7 421,923 + -0.4 421,923 + +1.0 421,923 + +0.2 421,923 + +1.2 421,924 - -0.6 421,924 - +0.4 421,924 - +0.3 421,924 - +0.6 421,924 - +0.6 421,924 - -0.4 421,924 - -1.6 421,924 - -0.4 421,924 - +0.6 421,924 - -1.8 422,250 - MPMX19_05705 0.14 +0.2 422,289 + MPMX19_05705 0.19 +0.1 422,289 + MPMX19_05705 0.19 +0.6 422,290 - MPMX19_05705 0.19 +0.1 422,292 + MPMX19_05705 0.19 -0.9 422,292 + MPMX19_05705 0.19 -0.2 422,292 + MPMX19_05705 0.19 +1.9 422,292 + MPMX19_05705 0.19 -0.6 422,292 + MPMX19_05705 0.19 -0.4 422,293 - MPMX19_05705 0.19 -0.2 422,293 - MPMX19_05705 0.19 -1.9 422,293 - MPMX19_05705 0.19 +0.2 422,293 - MPMX19_05705 0.19 -0.5 422,293 - MPMX19_05705 0.19 -2.2 422,293 - MPMX19_05705 0.19 +0.7 422,499 + MPMX19_05705 0.45 -0.5 422,499 + MPMX19_05705 0.45 -1.6 422,499 + MPMX19_05705 0.45 -0.0 422,500 - MPMX19_05705 0.46 -0.4 422,500 - MPMX19_05705 0.46 -0.5 422,649 + MPMX19_05705 0.64 -0.6 422,649 + MPMX19_05705 0.64 -1.1 422,649 + MPMX19_05705 0.64 -0.2 422,649 + MPMX19_05705 0.64 -1.2 422,649 + MPMX19_05705 0.64 +0.6 422,649 + MPMX19_05705 0.64 -1.1 422,649 + MPMX19_05705 0.64 -3.1 422,649 + MPMX19_05705 0.64 -1.2 422,649 + MPMX19_05705 0.64 -1.4 422,649 + MPMX19_05705 0.64 -0.0 422,649 + MPMX19_05705 0.64 -1.2 422,649 + MPMX19_05705 0.64 +0.9 422,649 + MPMX19_05705 0.64 -0.1 422,649 + MPMX19_05705 0.64 -0.0 422,649 + MPMX19_05705 0.64 -0.0 422,649 + MPMX19_05705 0.64 -0.1 422,649 + MPMX19_05705 0.64 +1.0 422,649 + MPMX19_05705 0.64 +0.2 422,649 + MPMX19_05705 0.64 -1.2 422,649 + MPMX19_05705 0.64 +0.2 422,650 - MPMX19_05705 0.65 +0.9 422,650 - MPMX19_05705 0.65 -0.3 422,650 - MPMX19_05705 0.65 -0.6 422,650 - MPMX19_05705 0.65 +0.1 422,650 - MPMX19_05705 0.65 -0.6 422,650 - MPMX19_05705 0.65 -0.2 422,650 - MPMX19_05705 0.65 -0.0 422,650 - MPMX19_05705 0.65 +0.0 422,650 - MPMX19_05705 0.65 +0.6 422,650 - MPMX19_05705 0.65 +0.7 422,650 - MPMX19_05705 0.65 +2.1 422,650 - MPMX19_05705 0.65 -1.4 422,650 - MPMX19_05705 0.65 -0.0 422,724 + MPMX19_05705 0.74 -0.3 422,724 + MPMX19_05705 0.74 +0.5 422,724 + MPMX19_05705 0.74 -0.0 422,725 - MPMX19_05705 0.74 -0.9 422,725 - MPMX19_05705 0.74 -0.3 422,725 - MPMX19_05705 0.74 +1.2 422,725 - MPMX19_05705 0.74 -1.1 422,725 - MPMX19_05705 0.74 -0.9 422,725 - MPMX19_05705 0.74 +0.4 422,795 + MPMX19_05705 0.83 +0.6 422,795 + MPMX19_05705 0.83 -0.5 422,795 + MPMX19_05705 0.83 -0.4 422,795 + MPMX19_05705 0.83 +0.5 422,795 + MPMX19_05705 0.83 +0.6 422,795 + MPMX19_05705 0.83 -0.6 422,795 + MPMX19_05705 0.83 +0.2 422,795 + MPMX19_05705 0.83 +0.7 422,795 + MPMX19_05705 0.83 +0.1 422,795 + MPMX19_05705 0.83 -1.2 422,796 - MPMX19_05705 0.83 -0.4 422,796 - MPMX19_05705 0.83 -1.0 422,796 - MPMX19_05705 0.83 -0.7 422,846 + MPMX19_05705 0.89 -1.0 422,846 + MPMX19_05705 0.89 +0.6 422,846 + MPMX19_05705 0.89 +0.3 422,846 + MPMX19_05705 0.89 -1.1 422,846 + MPMX19_05705 0.89 +0.4 422,846 + MPMX19_05705 0.89 -0.1 422,846 + MPMX19_05705 0.89 -0.9 422,846 + MPMX19_05705 0.89 +0.7 422,846 + MPMX19_05705 0.89 -1.9 422,847 - MPMX19_05705 0.89 +0.3 422,847 - MPMX19_05705 0.89 -0.6 422,847 - MPMX19_05705 0.89 -0.2 422,847 - MPMX19_05705 0.89 -3.5 422,847 - MPMX19_05705 0.89 +0.1 422,847 - MPMX19_05705 0.89 -0.5 422,847 - MPMX19_05705 0.89 +0.0 422,847 - MPMX19_05705 0.89 +0.1 422,847 - MPMX19_05705 0.89 -1.5 422,919 + -0.0 422,919 + +0.6 422,919 + -0.2 422,919 + -0.4 422,919 + -2.1 422,919 + -0.8 422,919 + -0.7 422,920 - -0.4 422,920 - -0.3 422,929 + -1.4 422,929 + -0.2 422,929 + -0.8 422,929 + -1.4 422,929 + -0.1 422,929 + -1.8 422,929 + -0.8 422,930 - +1.2 422,930 - +0.4 422,930 - +0.7 422,930 - -0.2 422,930 - -0.0 422,930 - -1.0 422,930 - +0.5 422,930 - -0.4 422,930 - +0.6 422,930 - +0.3 423,024 + +0.2 423,024 + -1.8 423,024 + +0.2 423,024 + +0.2 423,024 + -0.1 423,025 - -1.1 423,025 - -0.5 423,025 - -0.8 423,030 + +0.6 423,030 + +0.6 423,030 + -1.2 423,030 + -0.0 423,030 + -0.1 423,031 - +0.3 423,031 - -1.3 423,031 - -0.0 423,031 - +0.3 423,031 - -1.4 423,031 - +0.3 423,056 + -0.9 423,056 + -0.2 423,056 + -0.1 423,057 - +1.6 423,081 + +0.3 423,081 + +2.6 423,081 + +1.0 423,081 + -1.6 423,081 + -2.5 423,081 + -0.4 423,081 + -1.0 423,081 + -0.8 423,081 + +0.6 423,082 - +0.0 423,082 - -1.9 423,082 - +0.4 423,082 - +0.2 423,082 - -0.5 423,082 - +0.2 423,082 - -0.0 423,082 - -1.4 423,082 - -0.8 423,082 - -0.4 423,082 - -0.0 423,131 - +0.6 423,131 - -2.1 423,135 + +0.4 423,135 + -0.8 423,135 + +0.5 423,136 - +0.2 423,136 - -0.0 423,136 - +0.3 423,150 - +0.6 423,459 + -1.2 423,459 + -0.3 423,459 + -0.2 423,459 + -0.0 423,898 + MPMX19_05706 0.28 -0.9 423,898 + MPMX19_05706 0.28 -0.6 423,898 + MPMX19_05706 0.28 +0.2 423,898 + MPMX19_05706 0.28 +0.2 423,898 + MPMX19_05706 0.28 +0.8 423,898 + MPMX19_05706 0.28 -0.0 423,898 + MPMX19_05706 0.28 -0.4 423,898 + MPMX19_05706 0.28 -1.3 423,898 + MPMX19_05706 0.28 +0.5 423,898 + MPMX19_05706 0.28 +0.1 423,898 + MPMX19_05706 0.28 -0.2 423,899 - MPMX19_05706 0.28 +0.3 423,899 - MPMX19_05706 0.28 -1.4 423,899 - MPMX19_05706 0.28 -1.9 423,899 - MPMX19_05706 0.28 -0.2 423,899 - MPMX19_05706 0.28 -0.9 423,899 - MPMX19_05706 0.28 -0.8 423,899 - MPMX19_05706 0.28 -0.9 423,899 - MPMX19_05706 0.28 -0.5 423,899 - MPMX19_05706 0.28 +0.1
Or see this region's nucleotide sequence