Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05169

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05168 and MPMX19_05169 overlap by 4 nucleotidesMPMX19_05169 and MPMX19_05170 overlap by 4 nucleotides MPMX19_05168: MPMX19_05168 - Hemin transport system permease protein HmuU, at 669,936 to 670,979 _05168 MPMX19_05169: MPMX19_05169 - Vitamin B12-binding protein, at 670,976 to 671,962 _05169 MPMX19_05170: MPMX19_05170 - Fe(3+) dicitrate transport ATP-binding protein FecE, at 671,959 to 672,783 _05170 Position (kb) 670 671 672Strain fitness (log2 ratio) -2 -1 0 1 2at 670.308 kb on + strand, within MPMX19_05168at 670.309 kb on - strand, within MPMX19_05168at 670.309 kb on - strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.587 kb on + strand, within MPMX19_05168at 670.588 kb on - strand, within MPMX19_05168at 670.588 kb on - strand, within MPMX19_05168at 670.588 kb on - strand, within MPMX19_05168at 670.627 kb on + strand, within MPMX19_05168at 670.627 kb on + strand, within MPMX19_05168at 670.627 kb on + strand, within MPMX19_05168at 670.628 kb on - strand, within MPMX19_05168at 670.628 kb on - strand, within MPMX19_05168at 670.628 kb on - strand, within MPMX19_05168at 670.681 kb on + strand, within MPMX19_05168at 670.681 kb on + strand, within MPMX19_05168at 670.682 kb on - strand, within MPMX19_05168at 670.682 kb on - strand, within MPMX19_05168at 670.682 kb on - strand, within MPMX19_05168at 670.796 kb on + strand, within MPMX19_05168at 670.796 kb on + strand, within MPMX19_05168at 670.797 kb on - strand, within MPMX19_05168at 671.061 kb on + strandat 671.061 kb on + strandat 671.061 kb on + strandat 671.062 kb on - strandat 671.062 kb on - strandat 671.062 kb on - strandat 671.062 kb on - strandat 671.062 kb on - strandat 671.062 kb on - strandat 671.062 kb on - strandat 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.223 kb on + strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.224 kb on - strand, within MPMX19_05169at 671.340 kb on + strand, within MPMX19_05169at 671.340 kb on + strand, within MPMX19_05169at 671.340 kb on + strand, within MPMX19_05169at 671.340 kb on + strand, within MPMX19_05169at 671.340 kb on + strand, within MPMX19_05169at 671.340 kb on + strand, within MPMX19_05169at 671.340 kb on + strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.341 kb on - strand, within MPMX19_05169at 671.475 kb on + strand, within MPMX19_05169at 671.475 kb on + strand, within MPMX19_05169at 671.475 kb on + strand, within MPMX19_05169at 671.475 kb on + strand, within MPMX19_05169at 671.476 kb on - strand, within MPMX19_05169at 671.476 kb on - strand, within MPMX19_05169at 671.476 kb on - strand, within MPMX19_05169at 671.538 kb on + strand, within MPMX19_05169at 671.538 kb on + strand, within MPMX19_05169at 671.538 kb on + strand, within MPMX19_05169at 671.539 kb on - strand, within MPMX19_05169at 671.539 kb on - strand, within MPMX19_05169at 671.539 kb on - strand, within MPMX19_05169at 671.539 kb on - strand, within MPMX19_05169at 671.601 kb on + strand, within MPMX19_05169at 671.601 kb on + strand, within MPMX19_05169at 671.601 kb on + strand, within MPMX19_05169at 671.601 kb on + strand, within MPMX19_05169at 671.601 kb on + strand, within MPMX19_05169at 671.601 kb on + strand, within MPMX19_05169at 671.602 kb on - strand, within MPMX19_05169at 671.602 kb on - strand, within MPMX19_05169at 671.602 kb on - strand, within MPMX19_05169at 671.602 kb on - strand, within MPMX19_05169at 671.602 kb on - strand, within MPMX19_05169at 671.602 kb on - strand, within MPMX19_05169at 672.044 kb on + strand, within MPMX19_05170at 672.045 kb on - strand, within MPMX19_05170at 672.121 kb on + strand, within MPMX19_05170at 672.121 kb on + strand, within MPMX19_05170at 672.122 kb on - strand, within MPMX19_05170at 672.122 kb on - strand, within MPMX19_05170at 672.122 kb on - strand, within MPMX19_05170at 672.122 kb on - strand, within MPMX19_05170at 672.122 kb on - strand, within MPMX19_05170at 672.122 kb on - strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.652 kb on + strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170at 672.653 kb on - strand, within MPMX19_05170

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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670,308 + MPMX19_05168 0.36 +0.4
670,309 - MPMX19_05168 0.36 -0.9
670,309 - MPMX19_05168 0.36 -0.7
670,587 + MPMX19_05168 0.62 +1.9
670,587 + MPMX19_05168 0.62 +0.6
670,587 + MPMX19_05168 0.62 -0.2
670,587 + MPMX19_05168 0.62 -1.8
670,587 + MPMX19_05168 0.62 +0.5
670,587 + MPMX19_05168 0.62 -0.5
670,587 + MPMX19_05168 0.62 -0.8
670,588 - MPMX19_05168 0.62 -0.8
670,588 - MPMX19_05168 0.62 -0.8
670,588 - MPMX19_05168 0.62 -0.0
670,627 + MPMX19_05168 0.66 +0.5
670,627 + MPMX19_05168 0.66 -0.3
670,627 + MPMX19_05168 0.66 +0.9
670,628 - MPMX19_05168 0.66 -1.0
670,628 - MPMX19_05168 0.66 +0.3
670,628 - MPMX19_05168 0.66 -2.2
670,681 + MPMX19_05168 0.71 -2.4
670,681 + MPMX19_05168 0.71 +0.6
670,682 - MPMX19_05168 0.71 -0.5
670,682 - MPMX19_05168 0.71 -0.1
670,682 - MPMX19_05168 0.71 -0.4
670,796 + MPMX19_05168 0.82 +0.2
670,796 + MPMX19_05168 0.82 +1.0
670,797 - MPMX19_05168 0.82 +0.8
671,061 + -1.3
671,061 + -2.2
671,061 + -1.6
671,062 - +0.3
671,062 - +0.3
671,062 - -0.5
671,062 - -1.2
671,062 - -0.3
671,062 - -0.5
671,062 - -0.9
671,223 + MPMX19_05169 0.25 -0.5
671,223 + MPMX19_05169 0.25 +0.9
671,223 + MPMX19_05169 0.25 -0.5
671,223 + MPMX19_05169 0.25 +1.2
671,223 + MPMX19_05169 0.25 -0.6
671,223 + MPMX19_05169 0.25 -0.2
671,223 + MPMX19_05169 0.25 -0.3
671,223 + MPMX19_05169 0.25 +1.1
671,223 + MPMX19_05169 0.25 +0.1
671,223 + MPMX19_05169 0.25 +0.4
671,223 + MPMX19_05169 0.25 +0.1
671,223 + MPMX19_05169 0.25 -1.1
671,223 + MPMX19_05169 0.25 +0.4
671,223 + MPMX19_05169 0.25 -1.4
671,223 + MPMX19_05169 0.25 +0.6
671,224 - MPMX19_05169 0.25 -0.9
671,224 - MPMX19_05169 0.25 +0.3
671,224 - MPMX19_05169 0.25 +0.3
671,224 - MPMX19_05169 0.25 +0.5
671,224 - MPMX19_05169 0.25 +0.5
671,224 - MPMX19_05169 0.25 +0.8
671,224 - MPMX19_05169 0.25 -0.6
671,224 - MPMX19_05169 0.25 +0.2
671,224 - MPMX19_05169 0.25 -2.4
671,224 - MPMX19_05169 0.25 -1.4
671,224 - MPMX19_05169 0.25 +0.2
671,224 - MPMX19_05169 0.25 +0.2
671,224 - MPMX19_05169 0.25 -0.1
671,224 - MPMX19_05169 0.25 -1.8
671,224 - MPMX19_05169 0.25 -0.5
671,224 - MPMX19_05169 0.25 -2.2
671,224 - MPMX19_05169 0.25 -0.5
671,224 - MPMX19_05169 0.25 +0.2
671,224 - MPMX19_05169 0.25 -0.1
671,224 - MPMX19_05169 0.25 -0.3
671,224 - MPMX19_05169 0.25 +0.6
671,224 - MPMX19_05169 0.25 -2.2
671,224 - MPMX19_05169 0.25 -1.9
671,340 + MPMX19_05169 0.37 +1.2
671,340 + MPMX19_05169 0.37 +1.5
671,340 + MPMX19_05169 0.37 +0.6
671,340 + MPMX19_05169 0.37 -0.5
671,340 + MPMX19_05169 0.37 -0.7
671,340 + MPMX19_05169 0.37 -0.1
671,340 + MPMX19_05169 0.37 +0.0
671,341 - MPMX19_05169 0.37 +0.5
671,341 - MPMX19_05169 0.37 -0.3
671,341 - MPMX19_05169 0.37 +0.0
671,341 - MPMX19_05169 0.37 -1.0
671,341 - MPMX19_05169 0.37 -1.0
671,341 - MPMX19_05169 0.37 +0.8
671,341 - MPMX19_05169 0.37 -0.2
671,341 - MPMX19_05169 0.37 +1.1
671,341 - MPMX19_05169 0.37 +0.5
671,341 - MPMX19_05169 0.37 -1.6
671,475 + MPMX19_05169 0.51 +0.8
671,475 + MPMX19_05169 0.51 -0.3
671,475 + MPMX19_05169 0.51 +1.7
671,475 + MPMX19_05169 0.51 +1.5
671,476 - MPMX19_05169 0.51 -0.6
671,476 - MPMX19_05169 0.51 -0.2
671,476 - MPMX19_05169 0.51 -0.1
671,538 + MPMX19_05169 0.57 +0.1
671,538 + MPMX19_05169 0.57 +1.5
671,538 + MPMX19_05169 0.57 -1.1
671,539 - MPMX19_05169 0.57 +0.6
671,539 - MPMX19_05169 0.57 +0.4
671,539 - MPMX19_05169 0.57 +0.1
671,539 - MPMX19_05169 0.57 -0.5
671,601 + MPMX19_05169 0.63 -0.5
671,601 + MPMX19_05169 0.63 +0.5
671,601 + MPMX19_05169 0.63 +1.1
671,601 + MPMX19_05169 0.63 +1.1
671,601 + MPMX19_05169 0.63 +0.1
671,601 + MPMX19_05169 0.63 -1.8
671,602 - MPMX19_05169 0.63 +0.2
671,602 - MPMX19_05169 0.63 -0.5
671,602 - MPMX19_05169 0.63 -1.5
671,602 - MPMX19_05169 0.63 +0.7
671,602 - MPMX19_05169 0.63 -0.9
671,602 - MPMX19_05169 0.63 -1.3
672,044 + MPMX19_05170 0.10 +0.8
672,045 - MPMX19_05170 0.10 -1.7
672,121 + MPMX19_05170 0.20 +0.1
672,121 + MPMX19_05170 0.20 +0.3
672,122 - MPMX19_05170 0.20 -0.5
672,122 - MPMX19_05170 0.20 -0.9
672,122 - MPMX19_05170 0.20 +0.0
672,122 - MPMX19_05170 0.20 -0.6
672,122 - MPMX19_05170 0.20 -0.5
672,122 - MPMX19_05170 0.20 -0.7
672,652 + MPMX19_05170 0.84 -0.9
672,652 + MPMX19_05170 0.84 -0.4
672,652 + MPMX19_05170 0.84 -0.5
672,652 + MPMX19_05170 0.84 -0.6
672,652 + MPMX19_05170 0.84 +0.3
672,653 - MPMX19_05170 0.84 +0.6
672,653 - MPMX19_05170 0.84 -1.5
672,653 - MPMX19_05170 0.84 -0.3
672,653 - MPMX19_05170 0.84 -1.0
672,653 - MPMX19_05170 0.84 -1.8
672,653 - MPMX19_05170 0.84 -0.7

Or see this region's nucleotide sequence