Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05009 and MPMX19_05010 are separated by 28 nucleotides MPMX19_05010 and MPMX19_05011 overlap by 4 nucleotides MPMX19_05011 and MPMX19_05012 are separated by 214 nucleotides MPMX19_05012 and MPMX19_05013 are separated by 30 nucleotides
MPMX19_05009: MPMX19_05009 - hypothetical protein, at 491,908 to 492,243
_05009
MPMX19_05010: MPMX19_05010 - Oxygen-dependent coproporphyrinogen-III oxidase, at 492,272 to 493,159
_05010
MPMX19_05011: MPMX19_05011 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 493,156 to 493,716
_05011
MPMX19_05012: MPMX19_05012 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 493,931 to 494,500
_05012
MPMX19_05013: MPMX19_05013 - Cytochrome b, at 494,531 to 495,799
_05013
Position (kb) 493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.406 kb on + strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.407 kb on - strand, within MPMX19_05011 at 493.467 kb on - strand, within MPMX19_05011 at 493.511 kb on + strand, within MPMX19_05011 at 493.511 kb on + strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.512 kb on - strand, within MPMX19_05011 at 493.712 kb on + strand at 493.712 kb on + strand at 493.712 kb on + strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.713 kb on - strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.767 kb on + strand at 493.768 kb on - strand at 493.768 kb on - strand at 493.768 kb on - strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.769 kb on + strand at 493.770 kb on - strand at 493.792 kb on + strand at 493.792 kb on + strand at 493.792 kb on + strand at 493.793 kb on - strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.862 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 493.930 kb on + strand at 494.367 kb on - strand, within MPMX19_05012 at 494.402 kb on + strand, within MPMX19_05012 at 494.403 kb on - strand, within MPMX19_05012 at 494.463 kb on - strand at 494.463 kb on - strand at 494.621 kb on + strand at 494.622 kb on - strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.654 kb on + strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand at 494.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 493,406 + MPMX19_05011 0.45 +0.0 493,406 + MPMX19_05011 0.45 +0.6 493,406 + MPMX19_05011 0.45 -1.1 493,406 + MPMX19_05011 0.45 +0.3 493,406 + MPMX19_05011 0.45 -0.4 493,407 - MPMX19_05011 0.45 +0.6 493,407 - MPMX19_05011 0.45 +0.3 493,407 - MPMX19_05011 0.45 +0.8 493,407 - MPMX19_05011 0.45 +0.1 493,467 - MPMX19_05011 0.55 +1.2 493,511 + MPMX19_05011 0.63 -3.1 493,511 + MPMX19_05011 0.63 +1.3 493,512 - MPMX19_05011 0.63 +1.3 493,512 - MPMX19_05011 0.63 +0.2 493,512 - MPMX19_05011 0.63 -0.8 493,512 - MPMX19_05011 0.63 +1.0 493,512 - MPMX19_05011 0.63 +0.1 493,512 - MPMX19_05011 0.63 -0.3 493,512 - MPMX19_05011 0.63 +0.3 493,512 - MPMX19_05011 0.63 +0.3 493,712 + -0.9 493,712 + -1.4 493,712 + +0.2 493,713 - -0.1 493,713 - +0.2 493,713 - +0.5 493,713 - -1.5 493,713 - -1.4 493,713 - -0.3 493,767 + +0.2 493,767 + -0.1 493,767 + -0.0 493,767 + +0.3 493,767 + +0.3 493,767 + -0.5 493,768 - -0.9 493,768 - -2.6 493,768 - -0.2 493,769 + -0.9 493,769 + +0.0 493,769 + -0.9 493,769 + -2.1 493,770 - +0.1 493,792 + +0.8 493,792 + -0.7 493,792 + -0.4 493,793 - -1.4 493,862 + -2.2 493,862 + -1.5 493,862 + -0.1 493,862 + +0.2 493,930 + -0.8 493,930 + +1.6 493,930 + +0.6 493,930 + +1.6 494,367 - MPMX19_05012 0.76 +2.1 494,402 + MPMX19_05012 0.83 -0.4 494,403 - MPMX19_05012 0.83 +0.6 494,463 - +0.6 494,463 - -0.8 494,621 + -0.0 494,622 - -0.4 494,654 + +0.8 494,654 + +0.6 494,654 + -0.0 494,654 + +1.2 494,654 + +3.3 494,654 + -0.8 494,655 - -0.9 494,655 - +0.1 494,655 - -0.4 494,655 - -0.8 494,655 - +1.6 494,655 - +0.8
Or see this region's nucleotide sequence