Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04744 and MPMX19_04745 are separated by 366 nucleotides MPMX19_04745 and MPMX19_04746 are separated by 192 nucleotides MPMX19_04746 and MPMX19_04747 are separated by 4 nucleotides
MPMX19_04744: MPMX19_04744 - Formyltransferase/hydrolase complex Fhc subunit C, at 135,927 to 136,736
_04744
MPMX19_04745: MPMX19_04745 - HTH-type transcriptional regulator CdhR, at 137,103 to 138,122
_04745
MPMX19_04746: MPMX19_04746 - hypothetical protein, at 138,315 to 138,812
_04746
MPMX19_04747: MPMX19_04747 - hypothetical protein, at 138,817 to 139,518
_04747
Position (kb) 137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.446 kb on + strand, within MPMX19_04744 at 136.789 kb on + strand at 136.789 kb on + strand at 136.789 kb on + strand at 136.789 kb on + strand at 136.790 kb on - strand at 136.796 kb on + strand at 136.902 kb on + strand at 136.902 kb on + strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.903 kb on - strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.942 kb on + strand at 136.943 kb on - strand at 136.943 kb on - strand at 136.956 kb on + strand at 136.956 kb on + strand at 136.957 kb on - strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.069 kb on + strand at 137.070 kb on - strand at 137.070 kb on - strand at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.244 kb on + strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.245 kb on - strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.382 kb on + strand, within MPMX19_04745 at 137.383 kb on - strand, within MPMX19_04745 at 137.383 kb on - strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.886 kb on + strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.887 kb on - strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.910 kb on + strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.911 kb on - strand, within MPMX19_04745 at 137.913 kb on + strand, within MPMX19_04745 at 137.913 kb on + strand, within MPMX19_04745 at 137.913 kb on + strand, within MPMX19_04745 at 137.914 kb on - strand, within MPMX19_04745 at 138.240 kb on - strand at 138.240 kb on - strand at 138.244 kb on + strand at 138.244 kb on + strand at 138.244 kb on + strand at 138.244 kb on + strand at 138.245 kb on - strand at 138.245 kb on - strand at 138.319 kb on + strand at 138.320 kb on - strand at 138.320 kb on - strand at 138.320 kb on - strand at 138.320 kb on - strand at 138.399 kb on + strand, within MPMX19_04746 at 138.453 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.544 kb on + strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.545 kb on - strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.552 kb on + strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.553 kb on - strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.699 kb on + strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746 at 138.700 kb on - strand, within MPMX19_04746
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 136,446 + MPMX19_04744 0.64 +1.0 136,789 + +0.7 136,789 + +0.9 136,789 + -2.2 136,789 + +0.1 136,790 - -0.1 136,796 + +0.9 136,902 + +0.1 136,902 + +1.2 136,903 - +0.3 136,903 - -0.9 136,903 - -0.8 136,903 - -1.7 136,903 - -0.5 136,903 - +0.5 136,903 - +0.2 136,903 - -0.9 136,903 - -0.7 136,903 - -0.7 136,942 + -0.2 136,942 + -1.3 136,942 + +0.2 136,942 + -1.4 136,942 + +0.6 136,942 + -0.1 136,942 + -0.9 136,943 - -0.9 136,943 - +0.8 136,956 + -1.7 136,956 + +1.8 136,957 - -0.4 137,069 + -0.9 137,069 + +1.5 137,069 + -2.9 137,069 + -0.1 137,069 + +0.1 137,070 - -0.3 137,070 - +0.6 137,244 + MPMX19_04745 0.14 +1.2 137,244 + MPMX19_04745 0.14 -0.9 137,244 + MPMX19_04745 0.14 +1.9 137,244 + MPMX19_04745 0.14 +1.5 137,244 + MPMX19_04745 0.14 +0.7 137,244 + MPMX19_04745 0.14 -0.7 137,244 + MPMX19_04745 0.14 -0.8 137,244 + MPMX19_04745 0.14 -0.7 137,244 + MPMX19_04745 0.14 -1.2 137,244 + MPMX19_04745 0.14 -0.5 137,245 - MPMX19_04745 0.14 -0.8 137,245 - MPMX19_04745 0.14 +0.4 137,245 - MPMX19_04745 0.14 -0.4 137,245 - MPMX19_04745 0.14 -0.0 137,245 - MPMX19_04745 0.14 -0.5 137,245 - MPMX19_04745 0.14 -0.1 137,245 - MPMX19_04745 0.14 -0.3 137,382 + MPMX19_04745 0.27 -0.2 137,382 + MPMX19_04745 0.27 +0.5 137,382 + MPMX19_04745 0.27 -1.7 137,382 + MPMX19_04745 0.27 +0.4 137,383 - MPMX19_04745 0.27 +1.0 137,383 - MPMX19_04745 0.27 -0.4 137,886 + MPMX19_04745 0.77 -0.4 137,886 + MPMX19_04745 0.77 -0.2 137,886 + MPMX19_04745 0.77 -0.6 137,886 + MPMX19_04745 0.77 -0.1 137,886 + MPMX19_04745 0.77 -2.9 137,886 + MPMX19_04745 0.77 +0.7 137,886 + MPMX19_04745 0.77 +0.7 137,886 + MPMX19_04745 0.77 -0.7 137,886 + MPMX19_04745 0.77 +0.4 137,886 + MPMX19_04745 0.77 +0.3 137,886 + MPMX19_04745 0.77 -0.1 137,887 - MPMX19_04745 0.77 +0.4 137,887 - MPMX19_04745 0.77 -0.3 137,887 - MPMX19_04745 0.77 -0.2 137,887 - MPMX19_04745 0.77 -0.4 137,887 - MPMX19_04745 0.77 +0.0 137,887 - MPMX19_04745 0.77 -1.1 137,887 - MPMX19_04745 0.77 +0.5 137,887 - MPMX19_04745 0.77 -0.2 137,887 - MPMX19_04745 0.77 +0.5 137,887 - MPMX19_04745 0.77 +0.3 137,887 - MPMX19_04745 0.77 +0.5 137,887 - MPMX19_04745 0.77 -0.8 137,887 - MPMX19_04745 0.77 -0.5 137,887 - MPMX19_04745 0.77 -0.7 137,910 + MPMX19_04745 0.79 +1.5 137,910 + MPMX19_04745 0.79 -0.9 137,910 + MPMX19_04745 0.79 -0.4 137,910 + MPMX19_04745 0.79 -0.9 137,910 + MPMX19_04745 0.79 +0.5 137,910 + MPMX19_04745 0.79 -0.9 137,910 + MPMX19_04745 0.79 +0.4 137,910 + MPMX19_04745 0.79 -1.7 137,911 - MPMX19_04745 0.79 +1.5 137,911 - MPMX19_04745 0.79 -0.3 137,911 - MPMX19_04745 0.79 -0.7 137,911 - MPMX19_04745 0.79 +0.1 137,911 - MPMX19_04745 0.79 +0.1 137,911 - MPMX19_04745 0.79 -0.9 137,911 - MPMX19_04745 0.79 -0.6 137,911 - MPMX19_04745 0.79 -0.4 137,911 - MPMX19_04745 0.79 +0.3 137,913 + MPMX19_04745 0.79 -0.2 137,913 + MPMX19_04745 0.79 -1.5 137,913 + MPMX19_04745 0.79 -0.5 137,914 - MPMX19_04745 0.80 +0.5 138,240 - +0.8 138,240 - +0.5 138,244 + -0.7 138,244 + -0.2 138,244 + +0.8 138,244 + +1.3 138,245 - +1.9 138,245 - +0.5 138,319 + +1.1 138,320 - -1.1 138,320 - -0.4 138,320 - -0.8 138,320 - +0.5 138,399 + MPMX19_04746 0.17 +0.3 138,453 + MPMX19_04746 0.28 -0.1 138,544 + MPMX19_04746 0.46 -2.2 138,544 + MPMX19_04746 0.46 -0.8 138,544 + MPMX19_04746 0.46 -0.9 138,544 + MPMX19_04746 0.46 +0.2 138,544 + MPMX19_04746 0.46 -1.3 138,544 + MPMX19_04746 0.46 -0.9 138,544 + MPMX19_04746 0.46 +1.5 138,544 + MPMX19_04746 0.46 +0.2 138,545 - MPMX19_04746 0.46 -0.6 138,545 - MPMX19_04746 0.46 -0.5 138,545 - MPMX19_04746 0.46 +0.5 138,545 - MPMX19_04746 0.46 -0.5 138,545 - MPMX19_04746 0.46 +1.9 138,545 - MPMX19_04746 0.46 +0.3 138,545 - MPMX19_04746 0.46 +1.5 138,545 - MPMX19_04746 0.46 -1.5 138,545 - MPMX19_04746 0.46 +0.4 138,545 - MPMX19_04746 0.46 -0.1 138,545 - MPMX19_04746 0.46 +1.2 138,552 + MPMX19_04746 0.48 +0.4 138,552 + MPMX19_04746 0.48 -0.1 138,552 + MPMX19_04746 0.48 +0.1 138,553 - MPMX19_04746 0.48 +0.1 138,553 - MPMX19_04746 0.48 -2.4 138,553 - MPMX19_04746 0.48 +0.1 138,699 + MPMX19_04746 0.77 +0.4 138,699 + MPMX19_04746 0.77 -0.4 138,699 + MPMX19_04746 0.77 +0.2 138,699 + MPMX19_04746 0.77 -0.8 138,699 + MPMX19_04746 0.77 -0.9 138,699 + MPMX19_04746 0.77 -1.3 138,699 + MPMX19_04746 0.77 -0.9 138,699 + MPMX19_04746 0.77 -1.3 138,699 + MPMX19_04746 0.77 -2.5 138,700 - MPMX19_04746 0.77 -1.3 138,700 - MPMX19_04746 0.77 -0.5 138,700 - MPMX19_04746 0.77 -0.3 138,700 - MPMX19_04746 0.77 -1.7 138,700 - MPMX19_04746 0.77 +0.5
Or see this region's nucleotide sequence