Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04634 and MPMX19_04635 overlap by 16 nucleotides MPMX19_04635 and MPMX19_04636 are separated by 10 nucleotides
MPMX19_04634: MPMX19_04634 - hypothetical protein, at 11,592 to 13,109
_04634
MPMX19_04635: MPMX19_04635 - D-inositol-3-phosphate glycosyltransferase, at 13,094 to 14,281
_04635
MPMX19_04636: MPMX19_04636 - D-inositol-3-phosphate glycosyltransferase, at 14,292 to 15,551
_04636
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.120 kb on + strand, within MPMX19_04634 at 12.121 kb on - strand, within MPMX19_04634 at 12.121 kb on - strand, within MPMX19_04634 at 12.121 kb on - strand, within MPMX19_04634 at 12.121 kb on - strand, within MPMX19_04634 at 12.145 kb on - strand, within MPMX19_04634 at 12.208 kb on - strand, within MPMX19_04634 at 12.222 kb on + strand, within MPMX19_04634 at 12.222 kb on + strand, within MPMX19_04634 at 12.222 kb on + strand, within MPMX19_04634 at 12.223 kb on - strand, within MPMX19_04634 at 12.223 kb on - strand, within MPMX19_04634 at 12.223 kb on - strand, within MPMX19_04634 at 12.642 kb on + strand, within MPMX19_04634 at 12.642 kb on + strand, within MPMX19_04634 at 12.642 kb on + strand, within MPMX19_04634 at 12.643 kb on - strand, within MPMX19_04634 at 12.643 kb on - strand, within MPMX19_04634 at 12.643 kb on - strand, within MPMX19_04634 at 12.643 kb on - strand, within MPMX19_04634 at 12.643 kb on - strand, within MPMX19_04634 at 12.643 kb on - strand, within MPMX19_04634 at 12.663 kb on + strand, within MPMX19_04634 at 12.663 kb on + strand, within MPMX19_04634 at 12.663 kb on + strand, within MPMX19_04634 at 12.664 kb on - strand, within MPMX19_04634 at 12.664 kb on - strand, within MPMX19_04634 at 12.664 kb on - strand, within MPMX19_04634 at 12.717 kb on - strand, within MPMX19_04634 at 12.834 kb on + strand, within MPMX19_04634 at 12.834 kb on + strand, within MPMX19_04634 at 12.835 kb on - strand, within MPMX19_04634 at 12.835 kb on - strand, within MPMX19_04634 at 12.835 kb on - strand, within MPMX19_04634 at 12.835 kb on - strand, within MPMX19_04634 at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.211 kb on + strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.212 kb on - strand at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.625 kb on + strand, within MPMX19_04635 at 13.626 kb on - strand, within MPMX19_04635 at 13.626 kb on - strand, within MPMX19_04635 at 13.682 kb on + strand, within MPMX19_04635 at 13.962 kb on - strand, within MPMX19_04635 at 14.291 kb on + strand at 14.291 kb on + strand at 14.292 kb on - strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.682 kb on + strand, within MPMX19_04636 at 14.682 kb on + strand, within MPMX19_04636 at 15.231 kb on + strand, within MPMX19_04636 at 15.232 kb on - strand, within MPMX19_04636 at 15.232 kb on - strand, within MPMX19_04636 at 15.255 kb on + strand, within MPMX19_04636 at 15.255 kb on + strand, within MPMX19_04636 at 15.256 kb on - strand, within MPMX19_04636
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 12,120 + MPMX19_04634 0.35 -1.1 12,120 + MPMX19_04634 0.35 -0.5 12,120 + MPMX19_04634 0.35 -1.0 12,120 + MPMX19_04634 0.35 +0.9 12,120 + MPMX19_04634 0.35 +0.9 12,120 + MPMX19_04634 0.35 -0.8 12,120 + MPMX19_04634 0.35 -0.8 12,120 + MPMX19_04634 0.35 +0.3 12,120 + MPMX19_04634 0.35 +0.8 12,121 - MPMX19_04634 0.35 +0.3 12,121 - MPMX19_04634 0.35 -2.7 12,121 - MPMX19_04634 0.35 -1.0 12,121 - MPMX19_04634 0.35 -1.1 12,145 - MPMX19_04634 0.36 -1.1 12,208 - MPMX19_04634 0.41 +0.2 12,222 + MPMX19_04634 0.42 +0.5 12,222 + MPMX19_04634 0.42 -1.2 12,222 + MPMX19_04634 0.42 +1.1 12,223 - MPMX19_04634 0.42 -1.9 12,223 - MPMX19_04634 0.42 -0.5 12,223 - MPMX19_04634 0.42 -0.8 12,642 + MPMX19_04634 0.69 +0.9 12,642 + MPMX19_04634 0.69 -0.7 12,642 + MPMX19_04634 0.69 -1.2 12,643 - MPMX19_04634 0.69 +0.3 12,643 - MPMX19_04634 0.69 -0.3 12,643 - MPMX19_04634 0.69 +0.2 12,643 - MPMX19_04634 0.69 -1.9 12,643 - MPMX19_04634 0.69 +0.2 12,643 - MPMX19_04634 0.69 +0.5 12,663 + MPMX19_04634 0.71 +0.1 12,663 + MPMX19_04634 0.71 -2.1 12,663 + MPMX19_04634 0.71 -0.0 12,664 - MPMX19_04634 0.71 -2.2 12,664 - MPMX19_04634 0.71 +0.0 12,664 - MPMX19_04634 0.71 +0.7 12,717 - MPMX19_04634 0.74 -0.4 12,834 + MPMX19_04634 0.82 +0.1 12,834 + MPMX19_04634 0.82 -0.1 12,835 - MPMX19_04634 0.82 -2.2 12,835 - MPMX19_04634 0.82 +0.0 12,835 - MPMX19_04634 0.82 -1.3 12,835 - MPMX19_04634 0.82 -0.3 13,211 + -1.3 13,211 + +1.5 13,211 + -2.3 13,211 + -2.2 13,211 + +0.6 13,211 + -0.1 13,211 + -2.3 13,211 + +0.9 13,211 + +1.7 13,211 + -2.1 13,211 + -1.4 13,211 + -1.1 13,211 + -1.1 13,211 + +0.4 13,211 + +0.1 13,211 + +0.1 13,211 + +0.5 13,211 + -0.8 13,212 - +1.5 13,212 - -0.9 13,212 - -0.5 13,212 - -0.6 13,212 - -1.1 13,212 - -0.5 13,212 - -2.6 13,212 - +0.1 13,212 - -1.9 13,212 - -1.1 13,562 + MPMX19_04635 0.39 -0.1 13,562 + MPMX19_04635 0.39 +0.9 13,562 + MPMX19_04635 0.39 -1.2 13,562 + MPMX19_04635 0.39 -0.6 13,562 + MPMX19_04635 0.39 -0.4 13,562 + MPMX19_04635 0.39 -1.0 13,562 + MPMX19_04635 0.39 -0.2 13,563 - MPMX19_04635 0.39 +0.7 13,563 - MPMX19_04635 0.39 -0.5 13,563 - MPMX19_04635 0.39 -1.1 13,563 - MPMX19_04635 0.39 -0.8 13,625 + MPMX19_04635 0.45 +2.2 13,626 - MPMX19_04635 0.45 -0.1 13,626 - MPMX19_04635 0.45 +1.5 13,682 + MPMX19_04635 0.49 -0.4 13,962 - MPMX19_04635 0.73 -0.1 14,291 + -0.5 14,291 + -1.7 14,292 - -1.1 14,297 + -0.8 14,297 + +0.3 14,297 + -0.1 14,297 + -0.2 14,297 + -0.8 14,297 + -0.1 14,297 + +2.1 14,297 + -0.5 14,297 + -0.9 14,297 + +0.7 14,297 - -1.3 14,298 - -0.7 14,298 - +0.5 14,298 - +0.6 14,298 - -0.8 14,682 + MPMX19_04636 0.31 +0.9 14,682 + MPMX19_04636 0.31 -2.4 15,231 + MPMX19_04636 0.75 -0.3 15,232 - MPMX19_04636 0.75 +1.5 15,232 - MPMX19_04636 0.75 +0.5 15,255 + MPMX19_04636 0.76 -0.3 15,255 + MPMX19_04636 0.76 +0.0 15,256 - MPMX19_04636 0.77 +0.2
Or see this region's nucleotide sequence