Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04600 and MPMX19_04601 are separated by 569 nucleotides MPMX19_04601 and MPMX19_04602 overlap by 4 nucleotides MPMX19_04602 and MPMX19_04603 are separated by 132 nucleotides
MPMX19_04600: MPMX19_04600 - hypothetical protein, at 984,545 to 984,994
_04600
MPMX19_04601: MPMX19_04601 - hypothetical protein, at 985,564 to 986,859
_04601
MPMX19_04602: MPMX19_04602 - IS21 family transposase ISMex39, at 986,856 to 987,587
_04602
MPMX19_04603: MPMX19_04603 - hypothetical protein, at 987,720 to 988,175
_04603
Position (kb) 985
986
987 Strain fitness (log2 ratio) -2
-1
0
1
2 at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.263 kb on + strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.264 kb on - strand at 985.274 kb on + strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.275 kb on - strand at 985.276 kb on + strand at 985.277 kb on - strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.400 kb on + strand at 985.401 kb on - strand at 985.401 kb on - strand at 985.401 kb on - strand at 985.501 kb on + strand at 985.501 kb on + strand at 985.502 kb on - strand at 985.502 kb on - strand at 985.502 kb on - strand at 985.628 kb on + strand at 985.642 kb on + strand at 985.642 kb on + strand at 985.643 kb on - strand at 985.655 kb on - strand at 985.673 kb on - strand at 985.720 kb on + strand, within MPMX19_04601 at 985.720 kb on + strand, within MPMX19_04601 at 985.720 kb on + strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.721 kb on - strand, within MPMX19_04601 at 985.753 kb on + strand, within MPMX19_04601 at 985.754 kb on - strand, within MPMX19_04601 at 985.861 kb on + strand, within MPMX19_04601 at 985.862 kb on - strand, within MPMX19_04601 at 985.862 kb on - strand, within MPMX19_04601 at 985.932 kb on + strand, within MPMX19_04601 at 985.932 kb on + strand, within MPMX19_04601 at 985.932 kb on + strand, within MPMX19_04601 at 985.933 kb on - strand, within MPMX19_04601 at 985.945 kb on + strand, within MPMX19_04601 at 985.945 kb on + strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.946 kb on - strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 985.999 kb on + strand, within MPMX19_04601 at 986.000 kb on - strand, within MPMX19_04601 at 986.000 kb on - strand, within MPMX19_04601 at 986.000 kb on - strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.032 kb on + strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.033 kb on - strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.149 kb on + strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.150 kb on - strand, within MPMX19_04601 at 986.219 kb on + strand, within MPMX19_04601 at 986.220 kb on - strand, within MPMX19_04601 at 986.220 kb on - strand, within MPMX19_04601 at 986.220 kb on - strand, within MPMX19_04601 at 986.275 kb on + strand, within MPMX19_04601 at 986.276 kb on - strand, within MPMX19_04601 at 986.276 kb on - strand, within MPMX19_04601 at 986.276 kb on - strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.356 kb on + strand, within MPMX19_04601 at 986.357 kb on - strand, within MPMX19_04601 at 986.405 kb on - strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.500 kb on + strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.501 kb on - strand, within MPMX19_04601 at 986.833 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.855 kb on + strand at 986.856 kb on - strand at 986.856 kb on - strand at 986.856 kb on - strand at 986.904 kb on + strand at 986.904 kb on + strand at 986.923 kb on - strand at 987.030 kb on + strand, within MPMX19_04602 at 987.030 kb on + strand, within MPMX19_04602 at 987.030 kb on + strand, within MPMX19_04602 at 987.030 kb on + strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.031 kb on - strand, within MPMX19_04602 at 987.093 kb on - strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.155 kb on + strand, within MPMX19_04602 at 987.156 kb on - strand, within MPMX19_04602 at 987.156 kb on - strand, within MPMX19_04602 at 987.156 kb on - strand, within MPMX19_04602 at 987.205 kb on + strand, within MPMX19_04602 at 987.206 kb on - strand, within MPMX19_04602 at 987.367 kb on - strand, within MPMX19_04602 at 987.367 kb on - strand, within MPMX19_04602 at 987.423 kb on + strand, within MPMX19_04602 at 987.423 kb on + strand, within MPMX19_04602 at 987.423 kb on + strand, within MPMX19_04602 at 987.694 kb on + strand at 987.694 kb on + strand at 987.694 kb on + strand at 987.695 kb on - strand at 987.695 kb on - strand at 987.695 kb on - strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.756 kb on + strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.757 kb on - strand at 987.857 kb on + strand, within MPMX19_04603 at 987.857 kb on + strand, within MPMX19_04603
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 985,263 + -0.7 985,263 + +0.6 985,263 + -1.4 985,263 + -0.2 985,263 + +0.7 985,264 - +0.3 985,264 - +0.0 985,264 - -1.0 985,264 - -0.6 985,264 - -1.0 985,264 - +1.4 985,264 - -0.4 985,264 - -0.5 985,264 - -0.1 985,264 - -0.5 985,274 + +0.0 985,275 - -0.6 985,275 - -0.7 985,275 - -0.8 985,275 - -1.2 985,276 + -0.6 985,277 - +0.7 985,400 + -2.0 985,400 + -0.7 985,400 + +1.0 985,400 + +0.0 985,400 + -0.5 985,400 + -0.2 985,400 + -1.2 985,400 + +0.0 985,400 + -0.0 985,401 - +0.1 985,401 - +1.0 985,401 - -1.6 985,501 + +0.3 985,501 + -1.0 985,502 - +0.6 985,502 - +0.2 985,502 - +0.3 985,628 + -0.5 985,642 + -0.2 985,642 + -2.1 985,643 - +0.2 985,655 - -1.6 985,673 - +0.6 985,720 + MPMX19_04601 0.12 +0.2 985,720 + MPMX19_04601 0.12 -0.4 985,720 + MPMX19_04601 0.12 -0.2 985,721 - MPMX19_04601 0.12 +0.9 985,721 - MPMX19_04601 0.12 -1.7 985,721 - MPMX19_04601 0.12 +0.3 985,721 - MPMX19_04601 0.12 -0.4 985,721 - MPMX19_04601 0.12 -0.7 985,721 - MPMX19_04601 0.12 -1.0 985,721 - MPMX19_04601 0.12 +0.8 985,721 - MPMX19_04601 0.12 +0.6 985,753 + MPMX19_04601 0.15 +0.9 985,754 - MPMX19_04601 0.15 +0.2 985,861 + MPMX19_04601 0.23 +1.3 985,862 - MPMX19_04601 0.23 -0.5 985,862 - MPMX19_04601 0.23 +0.7 985,932 + MPMX19_04601 0.28 -0.7 985,932 + MPMX19_04601 0.28 +0.6 985,932 + MPMX19_04601 0.28 -1.6 985,933 - MPMX19_04601 0.28 -2.0 985,945 + MPMX19_04601 0.29 -0.2 985,945 + MPMX19_04601 0.29 -0.7 985,946 - MPMX19_04601 0.29 +0.4 985,946 - MPMX19_04601 0.29 -1.6 985,946 - MPMX19_04601 0.29 -0.6 985,946 - MPMX19_04601 0.29 +0.0 985,946 - MPMX19_04601 0.29 +0.1 985,946 - MPMX19_04601 0.29 +0.0 985,946 - MPMX19_04601 0.29 -0.5 985,999 + MPMX19_04601 0.34 -0.3 985,999 + MPMX19_04601 0.34 -0.2 985,999 + MPMX19_04601 0.34 -0.6 985,999 + MPMX19_04601 0.34 -2.6 985,999 + MPMX19_04601 0.34 -1.2 985,999 + MPMX19_04601 0.34 +0.5 986,000 - MPMX19_04601 0.34 +1.0 986,000 - MPMX19_04601 0.34 -0.3 986,000 - MPMX19_04601 0.34 +1.8 986,032 + MPMX19_04601 0.36 +1.1 986,032 + MPMX19_04601 0.36 +0.3 986,032 + MPMX19_04601 0.36 -0.1 986,032 + MPMX19_04601 0.36 +1.3 986,032 + MPMX19_04601 0.36 -1.6 986,033 - MPMX19_04601 0.36 +1.0 986,033 - MPMX19_04601 0.36 -1.4 986,033 - MPMX19_04601 0.36 -0.6 986,033 - MPMX19_04601 0.36 -0.1 986,033 - MPMX19_04601 0.36 +0.6 986,033 - MPMX19_04601 0.36 -0.1 986,033 - MPMX19_04601 0.36 +2.2 986,033 - MPMX19_04601 0.36 -0.5 986,149 + MPMX19_04601 0.45 +0.3 986,149 + MPMX19_04601 0.45 -1.1 986,149 + MPMX19_04601 0.45 +0.3 986,149 + MPMX19_04601 0.45 +0.3 986,150 - MPMX19_04601 0.45 +1.0 986,150 - MPMX19_04601 0.45 -1.1 986,150 - MPMX19_04601 0.45 -0.3 986,150 - MPMX19_04601 0.45 -0.5 986,150 - MPMX19_04601 0.45 -2.3 986,150 - MPMX19_04601 0.45 -2.1 986,219 + MPMX19_04601 0.51 -0.4 986,220 - MPMX19_04601 0.51 -1.0 986,220 - MPMX19_04601 0.51 -0.3 986,220 - MPMX19_04601 0.51 +0.6 986,275 + MPMX19_04601 0.55 -0.4 986,276 - MPMX19_04601 0.55 -0.6 986,276 - MPMX19_04601 0.55 +2.0 986,276 - MPMX19_04601 0.55 +0.0 986,356 + MPMX19_04601 0.61 +0.2 986,356 + MPMX19_04601 0.61 -0.0 986,356 + MPMX19_04601 0.61 +1.3 986,356 + MPMX19_04601 0.61 -0.7 986,357 - MPMX19_04601 0.61 +0.3 986,405 - MPMX19_04601 0.65 -2.6 986,500 + MPMX19_04601 0.72 -0.2 986,500 + MPMX19_04601 0.72 -1.5 986,500 + MPMX19_04601 0.72 +0.6 986,500 + MPMX19_04601 0.72 +0.8 986,500 + MPMX19_04601 0.72 -0.6 986,500 + MPMX19_04601 0.72 -0.2 986,500 + MPMX19_04601 0.72 +0.0 986,500 + MPMX19_04601 0.72 +0.3 986,500 + MPMX19_04601 0.72 -0.4 986,500 + MPMX19_04601 0.72 -0.6 986,500 + MPMX19_04601 0.72 -1.2 986,501 - MPMX19_04601 0.72 -0.8 986,501 - MPMX19_04601 0.72 -0.3 986,501 - MPMX19_04601 0.72 -1.0 986,501 - MPMX19_04601 0.72 -2.4 986,501 - MPMX19_04601 0.72 -0.2 986,501 - MPMX19_04601 0.72 -1.7 986,501 - MPMX19_04601 0.72 -0.4 986,501 - MPMX19_04601 0.72 +0.4 986,501 - MPMX19_04601 0.72 -0.3 986,501 - MPMX19_04601 0.72 -1.3 986,501 - MPMX19_04601 0.72 +1.1 986,501 - MPMX19_04601 0.72 -0.2 986,501 - MPMX19_04601 0.72 +0.6 986,501 - MPMX19_04601 0.72 +0.8 986,501 - MPMX19_04601 0.72 +0.4 986,833 + +0.0 986,855 + -0.7 986,855 + -1.0 986,855 + +1.9 986,855 + -1.0 986,855 + -0.4 986,855 + +0.6 986,856 - -1.8 986,856 - -1.2 986,856 - -0.2 986,904 + -0.2 986,904 + -0.3 986,923 - -0.9 987,030 + MPMX19_04602 0.24 +0.2 987,030 + MPMX19_04602 0.24 -0.5 987,030 + MPMX19_04602 0.24 -0.9 987,030 + MPMX19_04602 0.24 -1.2 987,031 - MPMX19_04602 0.24 -0.7 987,031 - MPMX19_04602 0.24 -0.1 987,031 - MPMX19_04602 0.24 +0.6 987,031 - MPMX19_04602 0.24 -0.2 987,093 - MPMX19_04602 0.32 -0.3 987,155 + MPMX19_04602 0.41 -1.0 987,155 + MPMX19_04602 0.41 -1.2 987,155 + MPMX19_04602 0.41 +0.4 987,155 + MPMX19_04602 0.41 -0.7 987,155 + MPMX19_04602 0.41 +0.9 987,155 + MPMX19_04602 0.41 -0.4 987,156 - MPMX19_04602 0.41 +1.5 987,156 - MPMX19_04602 0.41 -1.3 987,156 - MPMX19_04602 0.41 -2.1 987,205 + MPMX19_04602 0.48 +0.4 987,206 - MPMX19_04602 0.48 -0.9 987,367 - MPMX19_04602 0.70 +1.6 987,367 - MPMX19_04602 0.70 -0.9 987,423 + MPMX19_04602 0.77 +0.3 987,423 + MPMX19_04602 0.77 -0.1 987,423 + MPMX19_04602 0.77 +0.0 987,694 + -1.4 987,694 + -1.2 987,694 + -0.4 987,695 - -0.4 987,695 - -0.1 987,695 - -1.6 987,756 + +0.2 987,756 + -1.1 987,756 + +0.3 987,756 + +0.6 987,756 + -0.6 987,756 + +0.6 987,757 - -0.6 987,757 - -1.0 987,757 - +0.8 987,757 - +0.6 987,757 - -0.9 987,757 - -2.2 987,757 - +0.4 987,757 - -1.9 987,857 + MPMX19_04603 0.30 -0.7 987,857 + MPMX19_04603 0.30 -0.1
Or see this region's nucleotide sequence